Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31346
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    26   0.44 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    26   0.44 
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    25   0.58 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    25   0.58 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.1  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   3.1  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.4  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -3

Query: 281 NNDKISDLASFSNGNIFLTCMYYFFNY 201
           +N+ IS++++++N N +   +YY  NY
Sbjct: 86  SNNYISNISNYNNNNNYNKKLYYNINY 112


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -3

Query: 281 NNDKISDLASFSNGNIFLTCMYYFFNY 201
           +N+ IS++++++N N +   +YY  NY
Sbjct: 324 SNNYISNISNYNNNNNYNKKLYYNINY 350


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -3

Query: 281 NNDKISDLASFSNGNIFLTCMYYFFNY 201
           +N+ IS++++++N N +   +YY  NY
Sbjct: 86  SNNYISNISNYNNDNNYNKKLYYNINY 112


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 287 FYNNDKISDLASFSNGNIFLTCMYYF 210
           F    +++D+ S SNG +FL  + +F
Sbjct: 20  FLGGPQLTDVCSASNGELFLALLNFF 45


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 652 TRWTEFIQPSLKKIKKIV 599
           T W+ FI P  KK++ +V
Sbjct: 389 TEWSSFINPWTKKLEFVV 406


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 652 TRWTEFIQPSLKKIKKIV 599
           T W+ FI P  KK++ +V
Sbjct: 95  TEWSSFINPWTKKLEFVV 112


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = +2

Query: 281 YKNVDIFILLIMKYKKVIRCPEYDCSLLIFFASIG 385
           Y  + I +   +++ + +   +YDC  L+F   +G
Sbjct: 385 YSVLPISVANELRHSRPVPAKKYDCVTLLFSGIVG 419


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = +2

Query: 281 YKNVDIFILLIMKYKKVIRCPEYDCSLLIFFASIG 385
           Y  + I +   +++ + +   +YDC  L+F   +G
Sbjct: 385 YSVLPISVANELRHSRPVPAKKYDCVTLLFSGIVG 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,302
Number of Sequences: 438
Number of extensions: 5207
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)