Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31344
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.0  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    25   4.1  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   5.5  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   5.5  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    24   7.2  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    24   7.2  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    24   9.5  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    24   9.5  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    24   9.5  

>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 136 EECPCKKQRDNKLVDQDFGMPLTPDD 213
           EE   KK +D ++VD  FG+ L+ DD
Sbjct: 338 EEEERKKGKDGQIVDAGFGLVLSKDD 363


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -2

Query: 152 LQGHSSSATTILINSN 105
           L+GHSSS T++L ++N
Sbjct: 10  LRGHSSSVTSVLFDAN 25


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 383 VFTDISSGEKCWTSKLIWNLS 321
           VF ++ SG K WT  + W+ S
Sbjct: 56  VFDEVQSGIKRWTDGIAWSPS 76


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 42  LLQLSDNEEFHSVLHYCRAICV 107
           LL L+DN+E   + H C+  C+
Sbjct: 236 LLTLNDNDEPVMIRHSCKRTCI 257


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 302 PQSRRKKINSRSIWTSNISRRMKYL 376
           PQ R K  N   + +   SR++KYL
Sbjct: 597 PQKRSKSWNQAFVVSDTFSRKVKYL 621


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 292 RGPKTPCAAKVGSSRELSTASSCLLRSRPELAA 194
           +GP+  C   V  + ++  + S L   RP+L++
Sbjct: 381 QGPQASCTEAVSLTADIDLSKSSLATPRPKLSS 413


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 199  LTPDDFLTNMMTPWI 243
            L PDD +  +M PWI
Sbjct: 1186 LHPDDHICEVMVPWI 1200


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = +1

Query: 169 KLVDQDFGMPLTPDDFLTN----MMTPWIVHDYFRPWRHTASLARDLSST-IKTEKDKFQ 333
           KL+  D  +PL+PD  L        TPW V+       H + L ++ + T IK    + Q
Sbjct: 344 KLLPSDRELPLSPDQLLLRGAQLRNTPW-VYGIVVFTGHESKLMKNTTETPIKRTSVEKQ 402

Query: 334 INLDV 348
           +N  +
Sbjct: 403 VNSQI 407


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 295 LSSTIKTEKDKFQINLDVQHFSPDEI 372
           L S+I+ EK +    LD++ +SP+E+
Sbjct: 475 LKSSIEKEKVEIVPFLDIRKYSPNEV 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,580,727
Number of Sequences: 5004
Number of extensions: 29233
Number of successful extensions: 97
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)