Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31344
         (390 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3515| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.77 
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)                 28   2.4  
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)                   28   3.1  
SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)                 27   5.4  
SB_45259| Best HMM Match : CH (HMM E-Value=0.00071)                    27   7.2  
SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19)                27   7.2  
SB_21856| Best HMM Match : RVT_1 (HMM E-Value=4.5e-32)                 26   9.5  
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)                 26   9.5  

>SB_3515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1295

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 280 TPCAAKVGSSRELSTASSCLLRSRPELAASRSPD 179
           TP +A   SS  L   S+CL+ S+P L   +S D
Sbjct: 835 TPSSATSTSSLSLKATSTCLVESKPPLTKQKSLD 868


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -3

Query: 286  PKTPCA--AKVGSSRELSTA-SSCLLRSRPELAASRSPDPQVCCLAAF 152
            PK  C+   KVGS+   S   SSCLL  +P         P  CCLAAF
Sbjct: 1886 PKKCCSKPTKVGSAPTSSQCPSSCLLACQPSC-------PMECCLAAF 1926


>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
          Length = 185

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +1

Query: 316 EKDKFQI-NLDVQHFSPDEISVK 381
           + DKFQI  LDV+ F P+EI+ K
Sbjct: 2   DADKFQIATLDVREFKPEEITCK 24



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 325 KFQINLDVQHFSPDEISVK 381
           KF + LDV  F P+E+ VK
Sbjct: 99  KFTLALDVSDFKPEEVDVK 117


>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
          Length = 210

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +1

Query: 295 LSSTIKTEKDKFQI-NLDVQHFSPDEISVK 381
           L++  + E DK +I  LDV+++ P+EIS+K
Sbjct: 29  LAANTEMEGDKVEIATLDVKNYRPEEISLK 58


>SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -2

Query: 212 SSGVSGIPKS*STSL--LSRCFLQGHSSSATTILINSNTDSTTVMENG 75
           S G  GI  +  T +  L +  L  HSS  T  LI+S+TD   V+  G
Sbjct: 666 SGGFDGIHTTNDTFIFELGKNVLPDHSSLCTLTLIHSSTDPPVVVTMG 713


>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
          Length = 259

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 289 RDLSSTIKTEKDKFQINLDVQHFSPDEISVK 381
           ++  S    +  KF + LDV  F P+E+ VK
Sbjct: 15  KENQSAATKDDTKFTLALDVSDFKPEEVDVK 45


>SB_45259| Best HMM Match : CH (HMM E-Value=0.00071)
          Length = 1032

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 298 LGRGPKTPCAAKVGSSRELSTASSCLLRSRPELAASR 188
           + RGP+TP +A +  S+  +T     LR  P+  ASR
Sbjct: 477 ISRGPQTPYSANLAKSKSDTTIHR--LRGEPDPIASR 511


>SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19)
          Length = 167

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 155 FLQGHSSSATTILINSNTDSTTVMENG 75
           F + H      +L+NS  D T++M NG
Sbjct: 38  FSERHPGGKDVLLLNSGQDVTSIMSNG 64


>SB_21856| Best HMM Match : RVT_1 (HMM E-Value=4.5e-32)
          Length = 583

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -3

Query: 277 PCAAKVGSSRELSTASSCLLRSRPELAASRSPDPQVCCLAAFYRDILHLPLL 122
           P + ++G    L  A S L      LAASR+P P   C +  ++ +L  P++
Sbjct: 412 PHSPRLGYRAALGYARSLLTGPNFTLAASRAPGPGAACRSRRWQ-VLEEPII 462


>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
          Length = 189

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 310 KTEKDKFQINLDVQHFSPDEISVK 381
           K ++DKF + +DV  F P+ I V+
Sbjct: 92  KAKEDKFSMAIDVAGFPPESIKVQ 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,885,532
Number of Sequences: 59808
Number of extensions: 232960
Number of successful extensions: 601
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)