Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31344
         (390 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57470.1 68416.m06398 peptidase M16 family protein / insulina...    30   0.48 
At5g40890.1 68418.m04965 chloride channel protein (CLC-a) identi...    29   1.1  
At5g62470.2 68418.m07840 myb family transcription factor (MYB96)...    28   1.9  
At5g62470.1 68418.m07839 myb family transcription factor (MYB96)...    28   1.9  
At1g34740.1 68414.m04319 Ulp1 protease family protein contains P...    28   1.9  
At5g49890.1 68418.m06178 chloride channel protein (CLC-c) identi...    28   2.6  
At4g13490.1 68417.m02105 zinc finger (C3HC4-type RING finger) fa...    28   2.6  
At1g63480.1 68414.m07178 DNA-binding family protein contains a A...    27   4.5  
At1g09850.1 68414.m01109 cysteine protease, papain-like (XBCP3) ...    27   4.5  
At3g27170.1 68416.m03398 chloride channel protein (CLC-b) identi...    27   5.9  
At3g04810.2 68416.m00521 protein kinase, putative similar to LST...    27   5.9  
At1g44835.1 68414.m05136 YbaK/prolyl-tRNA synthetase family prot...    27   5.9  
At1g24851.1 68414.m03110 hypothetical protein                          27   5.9  
At5g17980.1 68418.m02109 C2 domain-containing protein contains I...    26   7.8  
At3g30190.1 68416.m03809 hypothetical protein                          26   7.8  

>At3g57470.1 68416.m06398 peptidase M16 family protein / insulinase
           family protein contains weak similarity to Pfam domain,
           PF05193: Peptidase M16 inactive domain
          Length = 776

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +1

Query: 196 PLTPDDFLTNMMTPW---IVHDYFRPWRHTASLARDLSSTIKTEKDKFQINLDVQHF 357
           PL P  FLTN +T     + H Y++   +++     L   I+  KD+F +N  +Q F
Sbjct: 646 PLFPSQFLTNRVTELGTGMKHFYYQEGSNSSDENSALVHYIQVHKDEFSMNSKLQLF 702


>At5g40890.1 68418.m04965 chloride channel protein (CLC-a) identical
           to GI:1742952 (gb|AAC05742.1)
          Length = 775

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 350 WTSKLIWNLSFSVLIVELRSRAKDAVCRQGRK*S*TIHGVIMF 222
           W S L+W   FS  +V +  RA   +C  G+       G+IMF
Sbjct: 275 WRSALLWRTFFSTAVVVVVLRAFIEICNSGKCGLFGSGGLIMF 317


>At5g62470.2 68418.m07840 myb family transcription factor (MYB96)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 352

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 179 STSLLSRCFLQGHSSSATTILINSNT 102
           S++LL RC+    SSS+TT    SNT
Sbjct: 197 SSALLDRCYDPSSSSSSTTTTTTSNT 222


>At5g62470.1 68418.m07839 myb family transcription factor (MYB96)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 351

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 179 STSLLSRCFLQGHSSSATTILINSNT 102
           S++LL RC+    SSS+TT    SNT
Sbjct: 196 SSALLDRCYDPSSSSSSTTTTTTSNT 221


>At1g34740.1 68414.m04319 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g27780,
           At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
           At1g25886, At4g03300
          Length = 1383

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +1

Query: 187 FGMPLTPDDFLTNMMTP--WI 243
           FG P  P+DF  N++TP  W+
Sbjct: 902 FGFPKVPNDFFANLLTPGEWV 922


>At5g49890.1 68418.m06178 chloride channel protein (CLC-c) identical
           to gi:1742956
          Length = 779

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -2

Query: 350 WTSKLIWNLSFSVLIVELRSRAKDAVCRQGRK*S*TIHGVIMFVKKSSGV 201
           W + L+W   F+  +V +  R+    CR GR       G+IMF   S  V
Sbjct: 284 WRNALLWRTFFTTAVVAVVLRSLIEFCRSGRCGLFGKGGLIMFDVNSGPV 333


>At4g13490.1 68417.m02105 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 226

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
 Frame = +1

Query: 139 ECPCKKQRDN------KLVDQDFGMPLTPDDFLTNMMTPWIVH 249
           ECPC +Q +       + VDQ     ++P D LTNM++P  +H
Sbjct: 63  ECPCCRQIEKGKWLFAEPVDQLEEDDMSPLDMLTNMVSPSFLH 105


>At1g63480.1 68414.m07178 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 361

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 159 ARQQTCGSGLRDAANSGRLLNKHDDAVDSSRLLPTLAAHGVFGPRPKLHNQDGK 320
           +R +T G  +  +   G ++    D + ++ L+  +A   V+G R K HN + K
Sbjct: 235 SRSRTGGLSVSLSRPDGSIIAGGVDMLIAANLVQVVACSFVYGARAKTHNNNNK 288


>At1g09850.1 68414.m01109 cysteine protease, papain-like (XBCP3)
           identical to papain-like cysteine peptidase XBCP3
           GI:14600257 from [Arabidopsis thaliana]; contains Pfam
           profiles PF00112: Papain family cysteine protease and
           PF00396: Granulin
          Length = 437

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 383 VFTDISSGEKCWTSKLIWNLSFSVLIVELRSRAKDAVCRQGR 258
           +FT  SSGE C  ++ ++ L FS    E+ S      C+ GR
Sbjct: 352 LFTYCSSGETCCCARELFGLCFSWKCCEIESA---VCCKDGR 390


>At3g27170.1 68416.m03398 chloride channel protein (CLC-b) identical
           to CLC-b chloride channel protein GB:CAA96058 from
           [Arabidopsis thaliana] (J. Biol. Chem. 271 (52),
           33632-33638 (1996))
          Length = 780

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 350 WTSKLIWNLSFSVLIVELRSRAKDAVCRQGRK*S*TIHGVIMF 222
           W S L+W   FS  +V +  R    +C  G+       G+IMF
Sbjct: 274 WRSALLWRTFFSTAVVVVVLREFIEICNSGKCGLFGKGGLIMF 316


>At3g04810.2 68416.m00521 protein kinase, putative similar to
           LSTK-1-like kinase [Lycopersicon esculentum]
           GI:15637110; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 578

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 180 SGLRDAANSGRLLNKHDDAVDSSRLLPTLAAHGVFGPR 293
           S  RDA+  G ++ +  +A  SSR +P  A+     PR
Sbjct: 309 SRFRDASGDGTVVRRTSEASKSSRYVPVRASASPVRPR 346


>At1g44835.1 68414.m05136 YbaK/prolyl-tRNA synthetase family protein
           contains Pfam PF04073: YbaK / prolyl-tRNA synthetases
           associated domain; similar to 25.7 kDa protein
           (GI:7271117) [Cicer arietinum]
          Length = 307

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 378 HRYFIRREMLDVQIDLEFIFFRLDCG 301
           HRY+I   M+D ++D++ +  RL  G
Sbjct: 55  HRYYIVSAMVDTKVDMKVLSQRLGLG 80


>At1g24851.1 68414.m03110 hypothetical protein
          Length = 258

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = -3

Query: 376 QIFHPARNVGRPN*SGIYLFPS*LWSLGRGPKTPCAAKVGSSRELSTASSCLLRSRPELA 197
           Q+  P + V RP  S     PS        PK P +  V +S     + +    +RP+  
Sbjct: 45  QLSRPKQLVSRPVSSSSSAHPSQAARQLSPPKYPASRSVSNSSSAHPSQAARQLTRPKYP 104

Query: 196 ASRS 185
           ASRS
Sbjct: 105 ASRS 108


>At5g17980.1 68418.m02109 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1049

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 199 LTPDDFLTNMMTPWIVHDYFRPWRHTASLARDLS 300
           LTP D      +P++V DY+   R T ++ RDL+
Sbjct: 17  LTPKDG-HGTSSPYVVLDYYGQRRRTRTIVRDLN 49


>At3g30190.1 68416.m03809 hypothetical protein
          Length = 263

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 18/65 (27%), Positives = 34/65 (52%)
 Frame = -2

Query: 218 KKSSGVSGIPKS*STSLLSRCFLQGHSSSATTILINSNTDSTTVMENGMKFFIIT*LQQY 39
           K +   +G   S S+S  S       SSS+++   +S+T S++   +   +F++  L +Y
Sbjct: 19  KMTKQCNGSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSSSSSSSSFSSYFVVP-LLRY 77

Query: 38  LDIVI 24
           L +VI
Sbjct: 78  LHVVI 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,269,786
Number of Sequences: 28952
Number of extensions: 155662
Number of successful extensions: 461
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)