Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31340
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    29   0.38 
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   8.1  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   8.1  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   8.1  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.1  

>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 433 MFFPSWYKTNQSPICSLRATASICSC 356
           +F P  YKTN +PI  L  T ++CSC
Sbjct: 256 IFTPILYKTNNNPII-LPITVTVCSC 280


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 1   VKYSSWTSFWTEN--FQLMAVTWSASQKWSPRNAWTR 105
           +K+S+W   W EN  +Q        S  +SP NA +R
Sbjct: 217 LKHSAWPVLWAENVTYQNGHYKKKGSSPFSPPNAHSR 253


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 12  FMDFFLDGEFSTYGSDVVSFTEMEPEERVDPMARVFPKVTKCTFHKYG 155
           FM+ F   +F+ Y    V+ T+ +    V   A +FPK+ K  F + G
Sbjct: 121 FMNAFTASDFTFYPFATVNTTDYKNLRDVYLDATLFPKLRKLDFLQEG 168


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 357 VAQGDCVRAASRDGRGVQRQRPCGIT-KKFHS 265
           +A+ +CV     DG  + RQ+  G+  K+FHS
Sbjct: 471 LAETECVWFLVEDGESLLRQKLYGLALKRFHS 502


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -1

Query: 202 NGKTHKPSNFCTVPDGPYLWKVHLV--TLGNTLAIGSTRSSGSISVKLTTSLP*VENSPS 29
           N +  KP  F    + P    +H +  TL N    G+T +   + +KL T LP    S +
Sbjct: 342 NHEVGKPIMF--KKEDPSSTTIHFLFSTLKNKKTKGNTNNMKPLLIKLFTKLPAHITSIT 399

Query: 28  KKKSMKN 8
           K +S++N
Sbjct: 400 KLQSLEN 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,393
Number of Sequences: 5004
Number of extensions: 51487
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)