Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31339
(513 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 180 5e-46
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_40036| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79) 31 0.74
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19) 27 6.9
SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21) 27 9.1
SB_23856| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
Length = 448
Score = 180 bits (439), Expect = 5e-46
Identities = 83/100 (83%), Positives = 93/100 (93%)
Frame = +2
Query: 212 DVQFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSP 391
DVQF+++LPPILNALEV+NR+PRL+LEVAQHLGENTVRTIAMDGTEGL+RGQ +D+G P
Sbjct: 85 DVQFDEDLPPILNALEVENRTPRLILEVAQHLGENTVRTIAMDGTEGLIRGQKCVDTGGP 144
Query: 392 IRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAP 511
I IPVG ETLGRIINVIGEPIDERGP+ TDK AAIHAEAP
Sbjct: 145 ITIPVGPETLGRIINVIGEPIDERGPVETDKRAAIHAEAP 184
>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +2
Query: 329 IAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAE 505
+ + G + L++ G V +G+ + +PVG E LGR+++ +G PID +GP + A + +
Sbjct: 12 VVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPTGGTR-ARVGVK 70
Query: 506 AP 511
AP
Sbjct: 71 AP 72
>SB_40036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 31.9 bits (69), Expect = 0.32
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -3
Query: 322 NCVLTQMLGYLKYEAGRSILHLKGI*NRRQVIFEL-HIYHSTDNGNNLTLAFSCRFSS 152
NC+L + GYLK ++ I++ G QV++ L +Y S + GNNL F +S
Sbjct: 48 NCLLWTIYGYLKDDSTIIIVNFVGA--LLQVVYILCFLYFSRERGNNLAFLFYSAIAS 103
>SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)
Length = 308
Score = 30.7 bits (66), Expect = 0.74
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = -1
Query: 513 FGASA*IAAVLSVGM--GPRSSIG-SPITLMMRPRV-SAPTGIRMGEPESSTG 367
FGA+ A S G+ G + S +T +P SAPTGI G+P SSTG
Sbjct: 87 FGATGTQATSASTGLSFGQLGNTSTSTLTAFGQPSTTSAPTGISFGQPTSSTG 139
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/54 (35%), Positives = 21/54 (38%)
Frame = -1
Query: 468 GPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSP 307
GP SS+ P T P PTG+ M P S P P P M SP
Sbjct: 684 GPPSSMSGPTTSRHGP---PPTGLTMNPPTSMGMAPMMPPPGPGMGTHPQQVSP 734
>SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 363
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +2
Query: 383 GSPIRIPVGAETLGRIINVIGEPIDERGPIPT 478
G PI P+G +GR I IG PI GPI T
Sbjct: 283 GRPIGRPIGL--IGRPIGPIGRPIGPIGPIGT 312
>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 362 GQPVLDSGSPIRIPVGAETL--GRIINVIGEPIDERGP 469
GQP D+G P G + G+++N GEP++ GP
Sbjct: 94 GQPANDTGQPSS-NAGQPLINTGQLVNNTGEPVNNTGP 130
>SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)
Length = 1341
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 238 RQVIFELHIYHSTDNGNNLTLAF 170
RQ H +HS D+ NNLT AF
Sbjct: 518 RQPYVTTHNHHSHDHNNNLTTAF 540
>SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)
Length = 636
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 221 FEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGT 346
F++++ P+LN L + +S L L ++ G N V +GT
Sbjct: 174 FQESVCPVLNTLTLHIKSSELDLNRPRNRGSNKVENGKNEGT 215
>SB_23856| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 281 GGEIDFAPQGHLESEAGYLRIAHL 210
G ID +P G +E E +LRI H+
Sbjct: 54 GYVIDVSPDGRVEMEKDHLRITHM 77
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,519,572
Number of Sequences: 59808
Number of extensions: 355898
Number of successful extensions: 843
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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