Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31339
(513 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 140 7e-34
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 140 7e-34
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 140 7e-34
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 44 6e-05
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 35 0.028
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 35 0.028
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 35 0.037
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 35 0.037
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 35 0.037
At3g54040.1 68416.m05975 photoassimilate-responsive protein-rela... 31 0.46
At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN ... 30 1.1
At1g69410.1 68414.m07972 eukaryotic translation initiation facto... 29 2.4
At3g62640.1 68416.m07036 expressed protein 28 4.2
At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains... 27 5.6
At5g39880.1 68418.m04837 expressed protein 27 7.4
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 27 7.4
At2g33100.1 68415.m04058 cellulose synthase family protein simil... 27 7.4
At2g43440.1 68415.m05399 F-box family protein contains Pfam PF00... 27 9.8
At1g51910.1 68414.m05851 protein kinase family protein contains ... 27 9.8
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 140 bits (338), Expect = 7e-34
Identities = 67/102 (65%), Positives = 82/102 (80%), Gaps = 2/102 (1%)
Frame = +2
Query: 212 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSG 385
DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G
Sbjct: 95 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 154
Query: 386 SPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAP 511
+PI +PVG TLGRI+NV+GEPIDERG I T+ IH +AP
Sbjct: 155 APITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAP 196
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 140 bits (338), Expect = 7e-34
Identities = 67/102 (65%), Positives = 82/102 (80%), Gaps = 2/102 (1%)
Frame = +2
Query: 212 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSG 385
DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G
Sbjct: 98 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 157
Query: 386 SPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAP 511
+PI +PVG TLGRI+NV+GEPIDERG I T+ IH +AP
Sbjct: 158 APITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAP 199
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 140 bits (338), Expect = 7e-34
Identities = 67/102 (65%), Positives = 82/102 (80%), Gaps = 2/102 (1%)
Frame = +2
Query: 212 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSG 385
DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G
Sbjct: 95 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 154
Query: 386 SPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAP 511
+PI +PVG TLGRI+NV+GEPIDERG I T+ IH +AP
Sbjct: 155 APITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAP 196
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 44.0 bits (99), Expect = 6e-05
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = +2
Query: 293 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 472
+A +L V + G + G V +GS + +P G LGR+++ +G PID +G +
Sbjct: 334 MALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGAL 393
Query: 473 PTDKTAAIHAEAP 511
+ + +AP
Sbjct: 394 SDHEQRRVEVKAP 406
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 35.1 bits (77), Expect = 0.028
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 308 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPI 472
GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI
Sbjct: 64 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 118
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 35.1 bits (77), Expect = 0.028
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 308 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPI 472
GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI
Sbjct: 64 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 118
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 34.7 bits (76), Expect = 0.037
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 308 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 472
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 117
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 34.7 bits (76), Expect = 0.037
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 308 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 472
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 117
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 34.7 bits (76), Expect = 0.037
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 308 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 472
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 117
>At3g54040.1 68416.m05975 photoassimilate-responsive protein-related
contains weak similarity to mRNA inducible by sucrose
and salicylic acid expressed in sugar-accumulating
tobacco plants (GI:871487) [Nicotiana tabacum]
Length = 183
Score = 31.1 bits (67), Expect = 0.46
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 227 DNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 358
+NLP + + + R +LE A GE T RT A+D EG+V
Sbjct: 29 ENLPTNMCSFSISASGKRCILETANVAGEFTCRTSAVD-VEGIV 71
>At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN
protein (ETT) identical to ETTIN GB:AF007788 from
[Arabidopsis thaliana]
Length = 608
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 317 CSHPNVGLPQVRGGEIDFAPQGHLESEAGY-LRIAHLPQH 201
C+ P + LP+ RG + + PQGHLE + I LP H
Sbjct: 59 CAGPLISLPK-RGSLVLYFPQGHLEQAPDFSAAIYGLPPH 97
>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similarity to
eukaryotic initiation factor 5A (2) (Nicotiana
plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Lycopersicon esculentum}
Length = 158
Score = 28.7 bits (61), Expect = 2.4
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -3
Query: 457 VNRFADY--IDDASEGFSSHRDTNG*ARVEYRLPTD*AFSTVHGNG 326
VNR DY ID + +GF S NG + + +LPTD A T NG
Sbjct: 85 VNR-VDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQLKNG 129
>At3g62640.1 68416.m07036 expressed protein
Length = 110
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/65 (24%), Positives = 27/65 (41%)
Frame = -1
Query: 417 VSAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWATSSTRRGDRFCTSRAFRIG 238
V T + P+S P P S + RT +P + T+R R T + + +
Sbjct: 27 VGGTTQVYSTRPDSPKFQPSIPPPPGSTSKTRTTATPWRLIDAETKRKKRIATYKTYALE 86
Query: 237 GRLSS 223
G++ S
Sbjct: 87 GKVKS 91
>At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains
Pfam profile: PF02362 B3 DNA binding domain; identical
to cDNA auxin response factor 4 (ARF4) GI:4102597
Length = 788
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 317 CSHPNVGLPQVRGGEIDFAPQGHLESEA 234
C+ P LP+ +G + + PQGHLE +A
Sbjct: 70 CAGPLTCLPK-KGNVVVYFPQGHLEQDA 96
>At5g39880.1 68418.m04837 expressed protein
Length = 363
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 120 LQSMPLTRGTMLLNLQEKAKVRLLPLSVLW*MCNSKITCL 239
LQ++P T T +LN +E++ + ++ MC +T L
Sbjct: 44 LQTLPFTEITEILNRKERSAPKTPEFKAMFTMCKGYVTYL 83
>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 691
Score = 27.1 bits (57), Expect = 7.4
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = -1
Query: 453 IGSPI-TLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWATSSTRR 277
+GSP+ TLM R S+ S+G KPSV S R + K + +
Sbjct: 40 LGSPVSTLMPRGSASSSAAATPTSSSGSSGSASGKPSVSSQMAKRLDDAYKSHSGELSSP 99
Query: 276 GDRF-CTSRAFRIGGRLSSN 220
G T+R + G R SS+
Sbjct: 100 GSGMPTTTRILKPGHRRSSS 119
>At2g33100.1 68415.m04058 cellulose synthase family protein similar
to gi:2827143 from Arabidopsis thaliana (Ath-B)
Length = 1036
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 399 IRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWATSSTRRGDR 268
++ G P + PR P++A V S CW +T GDR
Sbjct: 689 VKNGRPPGALLLPRPPLDAPTVAEAIAVIS--CWYEDNTEWGDR 730
>At2g43440.1 68415.m05399 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 791
Score = 26.6 bits (56), Expect = 9.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 401 GYEWVSQSRVQVAHGLSLQYRPWQ 330
GY W + +AHG+ + PWQ
Sbjct: 275 GYSWSKSYSISLAHGVGFSW-PWQ 297
>At1g51910.1 68414.m05851 protein kinase family protein contains
Serine/Threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 876
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 233 LPPILNALEVQNRSPRLVLEVAQ 301
LPP++NALEV L+LE Q
Sbjct: 343 LPPLINALEVYTLVENLLLETYQ 365
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,688,772
Number of Sequences: 28952
Number of extensions: 248601
Number of successful extensions: 651
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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