Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31335
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13698| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)                   28   6.0  

>SB_13698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 452 TKQRLFLTILLGFYFTILQAYEYIEASFTIADRIYGSTFFI 574
           T  R+FL IL+ F    L  + Y  A+FT   ++   T FI
Sbjct: 247 TGSRMFLDILIAFIIPYLLWFAYTIANFTFKPKLSFETEFI 287


>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 2675

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/86 (20%), Positives = 37/86 (43%)
 Frame = +2

Query: 374  NTIILIRSGVTVT*AHHSLIENNFSQTKQRLFLTILLGFYFTILQAYEYIEASFTIADRI 553
            + II+I++   +   HH +  N  +     + + I++    T++   +        +D  
Sbjct: 2244 SNIIIIKNNTIINTHHHVITSNKITTFNTTVIIIIIIIIITTVIVTTKIRTLDLQPSDES 2303

Query: 554  YGSTFFIATGFHGIHVIIGTLFLLNL 631
              S +     F  I ++IG  F+LNL
Sbjct: 2304 NFSGYI----FFVIFILIGAFFVLNL 2325


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,622,298
Number of Sequences: 59808
Number of extensions: 222819
Number of successful extensions: 310
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)