Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31333
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    29   0.51 
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    28   0.89 
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    27   1.5  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   3.6  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.7  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    25   6.2  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   8.3  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    25   8.3  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   8.3  

>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 392  SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 493
            S+S TSP   P S +Y A    Y PT  +  PTSP
Sbjct: 1591 SYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSP 1625



 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 392  SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 493
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1605 SYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1639



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 392  SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 493
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1612 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1646



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 392  SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 493
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1619 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1653



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 392  SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 493
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1626 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1660



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 392  SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 493
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1633 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1667



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 392  SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 493
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1640 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1674



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 392  SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 493
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1647 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1681



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 392  SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 493
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1654 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1688



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 392  SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 493
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1661 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1695



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 392  SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 493
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1668 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1702



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 392  SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 493
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1675 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1709



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 392  SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 493
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1682 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1716



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 392  SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 493
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1689 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1723



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 392  SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 493
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1696 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1730



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 392  SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 493
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1703 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1737



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 392  SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 493
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1710 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1744



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 392  SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 493
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1717 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1751



 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
 Frame = +3

Query: 375 PSLHRAHSPGHLLKVFP------SASITSPTRTD 458
           PSLH+    GH ++V P      + S+TSP   D
Sbjct: 454 PSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNAD 487


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +3

Query: 354 VETPLLFPSLHRAHSPGHLLKV--FPSASITSPTRTDTSPLVMLSPLP 491
           ++TP   PSL RA S  H++KV   P  S+ +  +T  S + +LS  P
Sbjct: 439 IQTPRS-PSLRRADSTSHIIKVPHLPDTSVKT-AKTGASEIDVLSRYP 484


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
 Frame = +2

Query: 200 APVRVVPKVSEGYGAETVKFGNEINPDGSYTYFYETNNGIAAQEQGVPRNLGGNPPAVPV 379
           AP  +       Y  ++ +     NP  SY      N GI A   G+P    G P  VP 
Sbjct: 99  APAAINNNFGYSYVGQSSQPVPSYNPLPSYNTASLPNAGIPAAMPGMP---SGYPGTVP- 154

Query: 380 VAQGSFS--WTSP--EGVPI-SVN---YVADENGYQPTGNAIPT 487
           + QG ++  ++SP   G PI +VN    +  +   QP  N +P+
Sbjct: 155 IPQGGYNAHYSSPYNNGYPIGAVNPTSAIPAQPPAQPVNNVLPS 198


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 399 PGHLLKVFPSASITSPTRTDTSPLVMLSPLP 491
           P H+  +    S+ + T+ D  PLV  SP P
Sbjct: 392 PAHITSITKLQSLENSTKNDNVPLVTHSPSP 422


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = +2

Query: 362  PPAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAIPTSPPVPEQIARALA--YIA 535
            PP  P+  + S +  S    P SVN VA++        A P  PP P  +  A    +++
Sbjct: 908  PPPPPLPVKTSLNTFSH---PDSVNIVANDTSVAGVMPAFPPPPPPPPPLVSAAGGKFVS 964

Query: 536  KKHSSQEVSDKSHR 577
               S+    D  H+
Sbjct: 965  PAVSNNISKDDLHK 978


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +2

Query: 203 PVRVVPKVSEGYGAETVKFGNEINPDGSYTYFYETNNGIAAQEQGVPRNLGGNPPAVPVV 382
           P   VP V+   GA      +   P+ +Y+    +N+  A  E       GG PP+VP +
Sbjct: 540 PAPPVPSVNNA-GARLTLRDSGAAPEATYSLRQPSNH--AYSEGRSYTFTGGQPPSVPTM 596

Query: 383 AQGS 394
             GS
Sbjct: 597 PYGS 600


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 85  LGGNRCHHASEYYCEFHFCYSSKTSYV 5
           +G N   +A + Y +FHF    K SYV
Sbjct: 21  IGSNFLDYAVDKYPDFHFTCIDKLSYV 47


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 356 GNPPAVPVVAQGSFSWTSPEGV 421
           GNPP+      GSF+ T PE +
Sbjct: 378 GNPPSSMEKVSGSFTGTKPEQI 399


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 392 SFSWTSPEGVPISVNYVADENGYQPTGNAIPTSPPVPE 505
           S SW    G   S+ + A   GY P   A+P S  +PE
Sbjct: 142 SSSWHGVTGGAASLTFAAARRGYGP---ALPGSYTIPE 176


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +2

Query: 335 GVPRNLGGNPPAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAIP 484
           G+P    G P AVP +  G    T+P G P S N     N   P G ++P
Sbjct: 534 GMPAPFPGYP-AVPAMP-GIPGATAPPGAPGSYNTSESSNLNAPPGVSMP 581


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,352
Number of Sequences: 5004
Number of extensions: 52067
Number of successful extensions: 199
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)