Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31331
         (602 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88879-1|AAC34134.1|  904|Homo sapiens Toll-like receptor 3 prot...    31   2.4  
DQ445682-1|ABE01399.1|  904|Homo sapiens Toll-like receptor 3 is...    31   2.4  
BC096335-1|AAH96335.1|  904|Homo sapiens toll-like receptor 3 pr...    31   2.4  
BC096334-1|AAH96334.1|  904|Homo sapiens toll-like receptor 3 pr...    31   2.4  
BC096333-1|AAH96333.1|  904|Homo sapiens toll-like receptor 3 pr...    31   2.4  
BC094737-1|AAH94737.1|  904|Homo sapiens toll-like receptor 3 pr...    31   2.4  
BC059372-1|AAH59372.1|  870|Homo sapiens TLR3 protein protein.         31   2.4  

>U88879-1|AAC34134.1|  904|Homo sapiens Toll-like receptor 3
           protein.
          Length = 904

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 57  RKKIIDNIQIKHTERTT*IG-KWKNLTILD-KFLTRNIISINXXXXXXRMIYKWDLL*NP 230
           R   + N Q+  T  TT +G KW NLT+LD  +   N++  +      ++ Y + L  N 
Sbjct: 251 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY-FFLEYNN 309

Query: 231 LS*FFQYGVHKIF 269
           +   F + +H +F
Sbjct: 310 IQHLFSHSLHGLF 322


>DQ445682-1|ABE01399.1|  904|Homo sapiens Toll-like receptor 3
           isoform NT2-N protein.
          Length = 904

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 57  RKKIIDNIQIKHTERTT*IG-KWKNLTILD-KFLTRNIISINXXXXXXRMIYKWDLL*NP 230
           R   + N Q+  T  TT +G KW NLT+LD  +   N++  +      ++ Y + L  N 
Sbjct: 251 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY-FFLEYNN 309

Query: 231 LS*FFQYGVHKIF 269
           +   F + +H +F
Sbjct: 310 IQHLFSHSLHGLF 322


>BC096335-1|AAH96335.1|  904|Homo sapiens toll-like receptor 3
           protein.
          Length = 904

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 57  RKKIIDNIQIKHTERTT*IG-KWKNLTILD-KFLTRNIISINXXXXXXRMIYKWDLL*NP 230
           R   + N Q+  T  TT +G KW NLT+LD  +   N++  +      ++ Y + L  N 
Sbjct: 251 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY-FFLEYNN 309

Query: 231 LS*FFQYGVHKIF 269
           +   F + +H +F
Sbjct: 310 IQHLFSHSLHGLF 322


>BC096334-1|AAH96334.1|  904|Homo sapiens toll-like receptor 3
           protein.
          Length = 904

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 57  RKKIIDNIQIKHTERTT*IG-KWKNLTILD-KFLTRNIISINXXXXXXRMIYKWDLL*NP 230
           R   + N Q+  T  TT +G KW NLT+LD  +   N++  +      ++ Y + L  N 
Sbjct: 251 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY-FFLEYNN 309

Query: 231 LS*FFQYGVHKIF 269
           +   F + +H +F
Sbjct: 310 IQHLFSHSLHGLF 322


>BC096333-1|AAH96333.1|  904|Homo sapiens toll-like receptor 3
           protein.
          Length = 904

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 57  RKKIIDNIQIKHTERTT*IG-KWKNLTILD-KFLTRNIISINXXXXXXRMIYKWDLL*NP 230
           R   + N Q+  T  TT +G KW NLT+LD  +   N++  +      ++ Y + L  N 
Sbjct: 251 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY-FFLEYNN 309

Query: 231 LS*FFQYGVHKIF 269
           +   F + +H +F
Sbjct: 310 IQHLFSHSLHGLF 322


>BC094737-1|AAH94737.1|  904|Homo sapiens toll-like receptor 3
           protein.
          Length = 904

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 57  RKKIIDNIQIKHTERTT*IG-KWKNLTILD-KFLTRNIISINXXXXXXRMIYKWDLL*NP 230
           R   + N Q+  T  TT +G KW NLT+LD  +   N++  +      ++ Y + L  N 
Sbjct: 251 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY-FFLEYNN 309

Query: 231 LS*FFQYGVHKIF 269
           +   F + +H +F
Sbjct: 310 IQHLFSHSLHGLF 322


>BC059372-1|AAH59372.1|  870|Homo sapiens TLR3 protein protein.
          Length = 870

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 57  RKKIIDNIQIKHTERTT*IG-KWKNLTILD-KFLTRNIISINXXXXXXRMIYKWDLL*NP 230
           R   + N Q+  T  TT +G KW NLT+LD  +   N++  +      ++ Y + L  N 
Sbjct: 251 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY-FFLEYNN 309

Query: 231 LS*FFQYGVHKIF 269
           +   F + +H +F
Sbjct: 310 IQHLFSHSLHGLF 322


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,618,207
Number of Sequences: 237096
Number of extensions: 1313586
Number of successful extensions: 5091
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5091
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6354183230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)