Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31331
         (602 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a '...    29   3.1  
At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a '...    29   3.1  
At1g52780.1 68414.m05966 expressed protein                             28   4.1  
At5g20770.1 68418.m02468 hypothetical protein                          27   9.6  

>At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a
            'Morpheus molecule') [Arabidopsis thaliana]
            gi|8132770|gb|AAF73381.1|
          Length = 2001

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 78   IQIKHTERTT*IGKWKNLTILDKFLTRNIIS 170
            ++ +H  RTT I K KNL I++K L    +S
Sbjct: 1783 VEAEHNTRTTKIEKDKNLVIMNKLLANAFLS 1813


>At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a
            'Morpheus molecule') [Arabidopsis thaliana]
            gi|8132770|gb|AAF73381.1|
          Length = 2001

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 78   IQIKHTERTT*IGKWKNLTILDKFLTRNIIS 170
            ++ +H  RTT I K KNL I++K L    +S
Sbjct: 1783 VEAEHNTRTTKIEKDKNLVIMNKLLANAFLS 1813


>At1g52780.1 68414.m05966 expressed protein 
          Length = 1059

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 437 ILRIITCTFRLGILCSFFFYLTN 505
           ILR++T TF +G + S  FY+++
Sbjct: 743 ILRVLTLTFSIGCITSLLFYVSS 765


>At5g20770.1 68418.m02468 hypothetical protein
          Length = 231

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -1

Query: 281 FPLKKNFVYAILKEL 237
           FPL+K FVY I KEL
Sbjct: 181 FPLRKTFVYPICKEL 195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,153,888
Number of Sequences: 28952
Number of extensions: 204319
Number of successful extensions: 273
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)