Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31328
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    27   1.1  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    27   1.1  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   1.9  
SPCC4B3.18 |||phosphopantothenate-cysteine ligase|Schizosaccharo...    25   3.3  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    24   5.8  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    24   7.6  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    24   7.6  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    24   7.6  

>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 1   HPSNAPHVATL*SFLNASLLMEII 72
           +P NAPH +   SF+ A+ L EI+
Sbjct: 187 YPKNAPHASKTMSFILANQLSEIV 210


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 142 LKLFRHEVSPVAALLGVCCDV 204
           L L R+ VSPV  +  VCCD+
Sbjct: 466 LVLSRNAVSPVPQVFEVCCDI 486


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 205 SARVPRALRVPDTFTQPQLPRQRDSRR 285
           +++V   L  P    QPQLP++ DS+R
Sbjct: 320 TSKVVLNLNDPKLLLQPQLPKKEDSQR 346


>SPCC4B3.18 |||phosphopantothenate-cysteine
           ligase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 316

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -3

Query: 240 IGNTQSTWYARADVTTHTKKSSNWRHLMSEQFQCTIEI*QVYMSLIISQNK 88
           I N  ST   +  V   T K+  W HL  +     +EI Q  +S  IS +K
Sbjct: 258 IANLLST--RKRSVAFVTSKTVEWLHLSDDDIVKKVEIEQYIVSRAISLHK 306


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 18  ARSNAVIIFKRKSINGNNNNIDIVYFVK*LVTCKLVIFR*CIEIV 152
           A+ N     K  S+  N+N I   YF++ +    +V F+  + +V
Sbjct: 355 AKPNTSAQQKMPSLGDNSNTIISKYFIREITESNIVHFKRLVRVV 399


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 240 IGNTQSTWYARADVTTHTKKSSNWRHLMSEQFQCTIEI*QV 118
           IG+ +      +D+   T+ +  W H++ E F C +E+ +V
Sbjct: 572 IGDIRMHLIESSDIYVVTE-NHRWLHIVCEGFNCFLELPEV 611


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 279 STPWPFXGGXXLGPPRVNMGGR 344
           STP PF G   + PP  N+  R
Sbjct: 275 STPSPFGGSPVMHPPVSNLSPR 296


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 151 TISMHYRNITSLHVTNYFTK 92
           T S+HY+  T++ VT  FT+
Sbjct: 458 TGSLHYKTTTTVWVTEVFTR 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,340,910
Number of Sequences: 5004
Number of extensions: 22627
Number of successful extensions: 44
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)