Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31328
         (344 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1022 - 8064032-8064657,8064823-8064893,8065926-8066047,806...    27   3.0  
02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344...    27   3.9  
12_02_0692 - 22197582-22198214,22198761-22198935,22199089-221991...    27   5.2  
08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378     26   9.1  
04_03_0376 + 15105874-15106230,15109207-15111573                       26   9.1  

>01_01_1022 -
           8064032-8064657,8064823-8064893,8065926-8066047,
           8066540-8066689,8067153-8067179,8067485-8067552,
           8067679-8067874
          Length = 419

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 124 LYFDSALKLFRHEVSPVAALLGVCCDVSARVPRA 225
           L ++   KLF   ++  A++LGVC  V  R+ R+
Sbjct: 45  LSYEEISKLFSLPIAEAASILGVCTSVLKRICRS 78


>02_05_0889 -
           32532495-32533832,32533919-32534151,32534321-32534461,
           32534564-32535521
          Length = 889

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 234 NTQSTWYARADVTTHTKKSSNWRHLMSEQFQCT 136
           NT +T Y  ++V  HT   S W  +    + CT
Sbjct: 510 NTATTQYTMSEVRRHTTPESAWIIVHGHVYDCT 542


>12_02_0692 -
           22197582-22198214,22198761-22198935,22199089-22199185,
           22199359-22199473,22199546-22199633,22199972-22200063,
           22200138-22200629,22201025-22201048,22201348-22203489
          Length = 1285

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 12/71 (16%)
 Frame = -3

Query: 336 PCLPSVGPGLXPXKKAK---AST----IPLPRELWLR-----EGIGNTQSTWYARADVTT 193
           PC+  +   L   KK K   AS+    I +   LWLR     E        W+  ++V++
Sbjct: 573 PCIKKICASLGKKKKLKPLLASSLQNIITISESLWLRGCKPIEMWTAPAGAWWLLSEVSS 632

Query: 192 HTKKSSNWRHL 160
              KS NW+ L
Sbjct: 633 FAPKSVNWKFL 643


>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
          Length = 477

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 242 PSRSHNSLGKGIVDALAFXXGXXPGPTEGKHGGP 343
           P+  H   G+G    +A   G   G   G HGGP
Sbjct: 27  PAGGHGRGGRGQEGPIAIAAGHGRGHRGGGHGGP 60


>04_03_0376 + 15105874-15106230,15109207-15111573
          Length = 907

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 163 VSPVAALL--GVCCDVSARVPRALRVPDTFTQPQL 261
           +SP+ A L   VC  ++  VP+ +R  +T T P+L
Sbjct: 20  ISPIVAKLVNSVCPRITLNVPKKIRDLETCTLPRL 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,308,427
Number of Sequences: 37544
Number of extensions: 164060
Number of successful extensions: 392
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)