Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31328
(344 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7592| Best HMM Match : PI-PLC-Y (HMM E-Value=1.1e-33) 32 0.11
SB_51507| Best HMM Match : SH2 (HMM E-Value=2.3e-22) 30 0.44
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.44
SB_58365| Best HMM Match : Lectin_C (HMM E-Value=1e-06) 29 1.3
SB_36460| Best HMM Match : Lectin_C (HMM E-Value=8e-05) 29 1.3
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0) 27 5.4
SB_53008| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_2237| Best HMM Match : Vicilin_N (HMM E-Value=2.5) 26 7.1
SB_41443| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.1
SB_24123| Best HMM Match : RCSD (HMM E-Value=3.8) 26 7.1
SB_49358| Best HMM Match : 7tm_1 (HMM E-Value=0) 26 9.4
>SB_7592| Best HMM Match : PI-PLC-Y (HMM E-Value=1.1e-33)
Length = 997
Score = 32.3 bits (70), Expect = 0.11
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 279 TIPLPRELWLREGIGNTQSTWYARADVTTHTKKSSNWRHLMSEQFQ 142
T P R LW EGI + + T+ A +T K+ S W++ Q Q
Sbjct: 222 TKPACRALWDYEGINDQEMTFCRGAFITNVVKEDSGWKNFRRRQRQ 267
>SB_51507| Best HMM Match : SH2 (HMM E-Value=2.3e-22)
Length = 192
Score = 30.3 bits (65), Expect = 0.44
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 279 TIPLPRELWLREGIGNTQSTWYARADVTTHTKKSSNWRHLMSEQ 148
T P R LW EGI + + T+ A +T K+ S W L++ +
Sbjct: 127 TKPACRALWDYEGINDQEMTFCRGAFITNVVKEDSGWYVLLTNR 170
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 30.3 bits (65), Expect = 0.44
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 297 KKAKASTIPLPRELWLREGIGNT-QSTWYARADVTTHTKKSSNWRHL 160
+K K S P P +WL G G + T + + DV + +SS HL
Sbjct: 13 RKLKTSAAPSPTRVWLAAGTGESIIHTTHQKKDVYKESTESSGSTHL 59
>SB_58365| Best HMM Match : Lectin_C (HMM E-Value=1e-06)
Length = 441
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 264 RELWLREGIGNTQSTWYARADVTTHTKKSSNWRHLMSEQFQCTIE 130
+ELW G +Q T Y+ A+V + +W L S C +E
Sbjct: 17 KELWTGILRGGSQDTTYSPANVGISMAATDSWLDLQSHNDTCYVE 61
>SB_36460| Best HMM Match : Lectin_C (HMM E-Value=8e-05)
Length = 452
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 264 RELWLREGIGNTQSTWYARADVTTHTKKSSNWRHLMSEQFQCTIE 130
+ELW G +Q T Y+ A+V + +W L S C +E
Sbjct: 38 KELWTGILRGGSQDTTYSPANVGISMAATDSWLDLQSHNDTCYVE 82
>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
Length = 2276
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 127 YFDSALKLFRHEVSPVAALLGVCC 198
Y ++F E+ PV LLG CC
Sbjct: 971 YCTKLSEVFESEIDPVMKLLGYCC 994
>SB_53008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 507
Score = 26.6 bits (56), Expect = 5.4
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +1
Query: 163 VSPVAALLGVCCDVSARVPRALRVPDTFTQPQLPRQRDSRRLGL 294
+SP A L CCD +A VP ALR+ F + SR L L
Sbjct: 269 LSPSATQLAACCDAAA-VP-ALRLGGLFPYCAYTHEAASRELPL 310
>SB_2237| Best HMM Match : Vicilin_N (HMM E-Value=2.5)
Length = 127
Score = 26.2 bits (55), Expect = 7.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 267 PRELWLREGIGNTQSTW 217
P+ELWL++ GNTQ+ +
Sbjct: 48 PKELWLQQKGGNTQNNY 64
Score = 25.8 bits (54), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 267 PRELWLREGIGNTQSTW 217
P+ELWL++ GNTQ +
Sbjct: 10 PKELWLQQKGGNTQKNY 26
Score = 25.8 bits (54), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 267 PRELWLREGIGNTQSTW 217
P+ELWL++ GNTQ +
Sbjct: 86 PKELWLQQKGGNTQKNY 102
>SB_41443| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 249 REGIGNTQSTWYARADVTTHTKKSSNWRHL 160
REG N Y+++ T+ +KK NWRH+
Sbjct: 144 REGYMNDLRVLYSQSKTTSVSKK-KNWRHV 172
>SB_24123| Best HMM Match : RCSD (HMM E-Value=3.8)
Length = 255
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 249 REGIGNTQSTWYARADVTTHTKKSSNWRHL 160
REG N Y+++ T+ +KK NWRH+
Sbjct: 144 REGYMNDLRVLYSQSKTTSVSKK-KNWRHV 172
>SB_49358| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 378
Score = 25.8 bits (54), Expect = 9.4
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -2
Query: 160 HV*TISMHYRNITSLHVTNYFTK*TMSMLLLFPLI 56
H+ MH RN+T++ + N + +L+FP +
Sbjct: 47 HLIRTRMHMRNVTNILIANMSAADLLMTILVFPYL 81
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,675,015
Number of Sequences: 59808
Number of extensions: 190422
Number of successful extensions: 510
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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