Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31328
         (344 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16080.1 68418.m01879 expressed protein similar to PrMC3 [Pin...    31   0.27 
At4g20850.1 68417.m03025 subtilase family protein contains simil...    29   1.1  
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit...    28   1.5  
At4g31500.1 68417.m04474 cytochrome P450 83B1 (CYP83B1) Identica...    27   3.4  
At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger) fa...    27   4.4  
At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger) fa...    27   4.4  
At1g47270.1 68414.m05233 F-box family protein / tubby family pro...    27   4.4  

>At5g16080.1 68418.m01879 expressed protein similar to PrMC3 [Pinus
           radiata] GI:5487873
          Length = 344

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 339 PPCLPSVGPGLXPXKKAKASTIPLPRELWLR 247
           PP +P V P + P  KA A  I L  + W R
Sbjct: 47  PPIVPIVSPTIHPSSKATAFDIKLSNDTWTR 77


>At4g20850.1 68417.m03025 subtilase family protein contains
           similarity to Tripeptidyl-peptidase II (EC 3.4.14.10)
           (TPP-II) (Tripeptidyl aminopeptidase)
           (Swiss-Prot:P29144) [Homo sapiens]
          Length = 1380

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 279 TIPLPRELWLREGIGNTQST-WYARADVTTHTKKSSNWRHLM 157
           TIP  R ++LREG    QST W  + D   H + +SN + L+
Sbjct: 643 TIPTSRGIYLREGTACRQSTEWTIQVDPKFH-EGASNLKELV 683


>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
           to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
           GI:9937505; contains Pfam profiles PF00240: Ubiquitin
           family, PF00627: UBA/TS-N domain
          Length = 551

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 255 TTPSAKG*STPWPFXGGXXLGPPRVNMGG 341
           T P+A     PW   GG    P R N+GG
Sbjct: 316 TIPNANPLPNPWGATGGQTTAPGRTNVGG 344


>At4g31500.1 68417.m04474 cytochrome P450 83B1 (CYP83B1) Identical
           to Cytochrome P450 (SP:O65782 )[Arabidopsis thaliana]
          Length = 499

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 115 VNLLYFDSAL--KLFRHEVSPVAALLGVCCDVSARVPRALRVPDTFTQPQLPRQRDSRR 285
           +++LY   AL   LF  ++ P    L     +SAR+ +A +  DT+ Q  L    D  R
Sbjct: 201 IDILYETQALLGTLFFSDLFPYFGFLDNLTGLSARLKKAFKELDTYLQELLDETLDPNR 259


>At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 162

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 158 CLNNFNALSKYNKFTCH*LFHK 93
           CL+ F   S+ NK  C  LFHK
Sbjct: 106 CLSKFQGDSEINKLKCGHLFHK 127


>At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 162

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 158 CLNNFNALSKYNKFTCH*LFHK 93
           CL+ F   S+ NK  C  LFHK
Sbjct: 106 CLSKFQGDSEINKLKCGHLFHK 127


>At1g47270.1 68414.m05233 F-box family protein / tubby family
           protein contains Pfam profiles: PF00646 F-box domain,
           PF01167 Tub family; similar to Chain A, C-Terminal
           Domain Of Mouse Brain Tubby Protein Length(GI:6730158)
           [Mus musculus]; similar to phosphodiesterase (GI:467578)
           [Mus musculus]; similar to Tubby protein homolog
           (Swiss-Prot:O88808) [Rattus norvegicus]
          Length = 413

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -3

Query: 276 IPLPRELWLR--EGIGNTQSTWYARADVTTHTKKSSNWRHLMSE 151
           + LP EL L   + I + QS W  R DV        +WR +  E
Sbjct: 70  VDLPPELLLDIIQRIESEQSLWPGRRDVVACASVCKSWREMTKE 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,162,712
Number of Sequences: 28952
Number of extensions: 122843
Number of successful extensions: 267
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)