Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31326
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36362| Best HMM Match : Asp (HMM E-Value=0)                        151   3e-37
SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09)                    38   0.005
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0)                   32   0.44 
SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.77 
SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)             29   4.1  
SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             28   5.4  
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)                 28   5.4  
SB_23568| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_48315| Best HMM Match : GASA (HMM E-Value=1.8)                      28   5.4  
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   5.4  
SB_49916| Best HMM Match : ig (HMM E-Value=8.5e-06)                    28   7.1  
SB_30397| Best HMM Match : TEA (HMM E-Value=1.2e-08)                   28   7.1  
SB_40510| Best HMM Match : Y_phosphatase (HMM E-Value=0)               27   9.4  
SB_27646| Best HMM Match : CbiK (HMM E-Value=2.2)                      27   9.4  
SB_1158| Best HMM Match : Toxin_24 (HMM E-Value=0.57)                  27   9.4  
SB_31966| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_36362| Best HMM Match : Asp (HMM E-Value=0)
          Length = 326

 Score =  151 bits (367), Expect = 3e-37
 Identities = 69/89 (77%), Positives = 77/89 (86%)
 Frame = +1

Query: 361 WVPSKKCHYTNIACLLHNKYDSRKSKTYVANGTQFAIQYGSGSLSGFLSTDDVTVGGLKV 540
           WVPSKKC +TNIACLLH+KYDS KS TY  NGT+FAI+YGSGSLSGFLS D V+VGG+ V
Sbjct: 68  WVPSKKCSWTNIACLLHDKYDSTKSSTYKKNGTEFAIRYGSGSLSGFLSIDTVSVGGIDV 127

Query: 541 RRQTFAEAVSEPGLAFVAAKFDGILGMAF 627
           + QTFAEA+ EPGL FVAAKFDGILGM F
Sbjct: 128 KGQTFAEALKEPGLTFVAAKFDGILGMGF 156



 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 41/67 (61%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
 Frame = +3

Query: 168 MKTARTHFHEVGTELELLRLKYDVT---GPSPEPLSNYLDAQYYGVISIGTPPQSFKVVF 338
           M T R    EVG  +E L  KY      G  PEPL NY+DAQYYG I+IGTPPQ F VVF
Sbjct: 1   MPTPRQSLKEVGISVEQLLGKYGGKYEGGDVPEPLINYMDAQYYGEITIGTPPQKFTVVF 60

Query: 339 DTGSSNL 359
           DTGSSNL
Sbjct: 61  DTGSSNL 67


>SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09)
          Length = 278

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 23/63 (36%), Positives = 31/63 (49%)
 Frame = +3

Query: 195 EVGTELELLRLKYDVTGPSPEPLSNYLDAQYYGVISIGTPPQSFKVVFDTGSSNLLGAFQ 374
           + G ++ LLR K D    + E L       YY   ++G+PPQ   V+ DTGSSN   A  
Sbjct: 11  KTGIKIPLLRTKRD-NNVAMENLKGRPGQGYYIASNLGSPPQRINVLVDTGSSNFAVAAS 69

Query: 375 KVP 383
             P
Sbjct: 70  AHP 72


>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 988

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = -1

Query: 412  CAANKRCWCS---GTFWKAPRRLEDPVSNTTLNDCGGVPILITP 290
            C  N   W +   G  W A  R+   + NT L DC  +P ++ P
Sbjct: 879  CRGNWTNWMNEFNGVTWNAQARIGSEIDNTVLMDCSNLPEMVQP 922


>SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0)
          Length = 1465

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
 Frame = +1

Query: 424 SRKSKTYVAN-----GTQFAIQYGSGSLSGF-LSTDDVTV---GGLKVRRQTFAEAVSEP 576
           +R S  Y+ N     G  F   +  G++ G  +   D+T+   GGLK+  Q  A+   +P
Sbjct: 537 ARASLVYIGNRRSSYGQTFGFMFRVGTVDGMQVDNGDITIEGEGGLKITTQLTAQGNPKP 596

Query: 577 GLAF 588
           G+AF
Sbjct: 597 GVAF 600


>SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 156 PLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEPLSNY 272
           PL   ++ R H  ++ T LEL+  K   + PS +PL++Y
Sbjct: 112 PLTWNESFRLHIKQIYTNLELITTKQHSSSPSRKPLNSY 150


>SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)
          Length = 585

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 144 LYRVPLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEP 260
           ++ V L  +K +  ++++ GT+L + +LK   T P P P
Sbjct: 244 IHDVLLTDLKPSSLYYYQYGTDLGMSKLKNFTTAPLPNP 282


>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1752

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -3

Query: 599  LAATKASPGSDTASANVWRRTLSPPTVTSSVERKPERLPEPYCIANWVP 453
            +A T+  PG +    NV+RRT+SP       ER+ E   + + ++ W+P
Sbjct: 1120 IAGTRR-PGLNPPKCNVFRRTMSP------CERQYELAIQRHVLSRWIP 1161


>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
          Length = 1510

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 539  TLSPPTVTSS-VERKPERLPEPYCIANW 459
            T SPP V S+ V R P R P+P    NW
Sbjct: 1232 TESPPDVASTPVRRYPRRTPKPVRRVNW 1259


>SB_23568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +1

Query: 340 TPDPPTFWVPSKKCHYTNIACLLHNKYDSRKSKTYVANGTQFAIQYGSGSLSGFLSTDDV 519
           T D  T WV  K  H     C L NK+ S+ S    A  T+  +++ + +    L T+D 
Sbjct: 47  TNDAITTWV-EKISHSKFTTCALKNKFGSQPSILLTAKHTRADLKHDAAT----LWTEDF 101

Query: 520 TVGGLKV 540
           + G  K+
Sbjct: 102 SAGNFKL 108


>SB_48315| Best HMM Match : GASA (HMM E-Value=1.8)
          Length = 340

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 539 TLSPPTVTSS-VERKPERLPEPYCIANW 459
           T SPP V S+ V R P R P+P    NW
Sbjct: 166 TESPPDVASTPVRRYPRRTPKPVRRVNW 193


>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 3369

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 617  PRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERKP 495
            P   S + +  ASP   T+S  + R+ LSP + TSSV   P
Sbjct: 3105 PTASSVMFSLDASPVKRTSSPRMSRKPLSPESGTSSVSGDP 3145


>SB_49916| Best HMM Match : ig (HMM E-Value=8.5e-06)
          Length = 465

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -3

Query: 539 TLSPPTVTSSVERKPERLPEP-YCIANWVPFATYVLDLRLSYLLCSKQAMLV*WHF 375
           T+SPP+  S+V  +  + P P   I   V  +  VL + L   LC ++   + W F
Sbjct: 96  TVSPPSAGSTVSTRQVKQPPPLLMIVGSVVGSILVLAIVLGLFLCLRRKKGLSWEF 151


>SB_30397| Best HMM Match : TEA (HMM E-Value=1.2e-08)
          Length = 281

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 282 QYYGVISIGTPPQSFKVVFDTGSSNLLGAFQKVP 383
           +YY  I+ G    ++++V +TGS N    ++++P
Sbjct: 206 EYYSNIATGASTGTWQIVPETGSHNFRSKWERIP 239


>SB_40510| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 734

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
 Frame = -1

Query: 436 WTCGCRTCCAAN--KRCWCSGTFWKAPRRLEDP-VSNTTLN 323
           W   CRT       +R +C    W+ P+R  DP    T +N
Sbjct: 451 WIVHCRTSLTRKLFQRLFCGSDLWERPQRTLDPRACGTAIN 491


>SB_27646| Best HMM Match : CbiK (HMM E-Value=2.2)
          Length = 423

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -1

Query: 232 YFNL---NSSSSVPTS*KWVLAVFIRCNGTLYSAITELAISAKKNKDIFP 92
           YFN+   N ++++P +  + L  F+    T+Y  I ++A +  K K  FP
Sbjct: 89  YFNIKVANGTNNIPWTSPFELETFM--GSTVYKTIAKIAKTVSKGKKYFP 136


>SB_1158| Best HMM Match : Toxin_24 (HMM E-Value=0.57)
          Length = 497

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 427 GCRTCCAANKRCWCSGTFWKAPRR 356
           G +TCC   K   C+G+F + P+R
Sbjct: 56  GQKTCCYPLKERACNGSFTRCPKR 79


>SB_31966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = -3

Query: 434 DLRLSYLLCSKQAMLV*WHFLEGTQKVGGSGVEYHLERLRRRADTDHSVVLSI 276
           D+ L Y + SKQ       FL   +  G S     L  LRRRADT    V ++
Sbjct: 189 DMELDYRVHSKQGGNDHPVFLPNLKHFGDSPESVKLNNLRRRADTQKVSVATL 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,626,241
Number of Sequences: 59808
Number of extensions: 415897
Number of successful extensions: 1661
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1661
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)