Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31325
         (335 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal prote...    87   3e-18
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    29   0.63 
AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical ...    29   0.83 
Z46267-9|CAA86427.2|  889|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical pr...    28   1.4  
Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical pr...    27   2.5  
Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical pr...    27   2.5  
L16560-3|AAA27998.1|  195|Caenorhabditis elegans Hypothetical pr...    27   2.5  
Z81067-4|CAB02976.2|  632|Caenorhabditis elegans Hypothetical pr...    27   3.3  
AL110490-7|CAD59175.1|  533|Caenorhabditis elegans Hypothetical ...    27   3.3  
AL110490-6|CAB54442.2|  687|Caenorhabditis elegans Hypothetical ...    27   3.3  
Z68270-11|CAJ90499.1|  394|Caenorhabditis elegans Hypothetical p...    26   5.8  

>L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 21 protein.
          Length = 161

 Score = 87.0 bits (206), Expect = 3e-18
 Identities = 43/78 (55%), Positives = 55/78 (70%), Gaps = 2/78 (2%)
 Frame = +3

Query: 18  IIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTV-NLKRQPAPPKAAH-IV 191
           I+PKRINIR+EH+K SKCR DFL RVK N+   K AK+AG+ V  LKR P  P+ AH + 
Sbjct: 84  ILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRLPVAPRGAHTVT 143

Query: 192 SGTEKPVLLAPIPYEFVA 245
           +   +P LLAP+ +E VA
Sbjct: 144 TQNNEPELLAPLRFEIVA 161


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 147 NLKRQPAPPKAAHIVSGTE 203
           NL+R+PAPPK  H+ S  E
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480


>AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical
           protein Y80D3A.9 protein.
          Length = 279

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 212 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 126
           DG LS  D+    RG+WL +   G  G L
Sbjct: 39  DGMLSGVDEKDVARGTWLGMDAHGKVGML 67


>Z46267-9|CAA86427.2|  889|Caenorhabditis elegans Hypothetical
           protein F49E2.5d protein.
          Length = 889

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 45  VEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVN-LKRQPAPPKAAHIVSGTEKPVLLA 221
           VE+V          +  K+N++  K++++   T   ++  PAPP+   +V   EKPV  A
Sbjct: 361 VENVVEKSTTPPATENKKKNKKDKKKSESEKVTEQPVESAPAPPQVEQVVEKVEKPV--A 418

Query: 222 PI 227
           P+
Sbjct: 419 PV 420


>Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical
           protein R186.1 protein.
          Length = 276

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 212 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 126
           DG LS  D   + RG+WL L  +G  G +
Sbjct: 39  DGILSGVDKQENARGTWLGLNENGRIGMM 67


>Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical
           protein C06H5.2 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -1

Query: 107 LILFDSLKEVLSALGVL 57
           LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216


>Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical
           protein C06H5.1 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -1

Query: 107 LILFDSLKEVLSALGVL 57
           LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216


>L16560-3|AAA27998.1|  195|Caenorhabditis elegans Hypothetical
           protein D2007.2 protein.
          Length = 195

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +3

Query: 3   FGTRRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAA 182
           FGT R+ P R   R    + S         + + E L++ A+++  +   +RQP      
Sbjct: 12  FGTARLTPGRQTGRQTQQQISAPEPMIAIALSDMEYLMRSARSSRSSGRSERQPGCTCCC 71

Query: 183 HIVSG 197
           HI +G
Sbjct: 72  HIAAG 76


>Z81067-4|CAB02976.2|  632|Caenorhabditis elegans Hypothetical
           protein F23A7.5 protein.
          Length = 632

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 8   HEEDYTEAHQYPC*ACQALQVQT 76
           H   +T+ +QY C AC+   VQT
Sbjct: 64  HFSQHTKVYQYKCRACERKMVQT 86


>AL110490-7|CAD59175.1|  533|Caenorhabditis elegans Hypothetical
           protein Y48B6A.6b protein.
          Length = 533

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/72 (22%), Positives = 29/72 (40%)
 Frame = +3

Query: 21  IPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGT 200
           +P     R+  V+  +  ++  +R KE+E      +   + + + R P PP    I    
Sbjct: 207 LPPTPPARITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPP 266

Query: 201 EKPVLLAPIPYE 236
              + L  IP E
Sbjct: 267 PPNIPLPTIPQE 278


>AL110490-6|CAB54442.2|  687|Caenorhabditis elegans Hypothetical
           protein Y48B6A.6a protein.
          Length = 687

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/72 (22%), Positives = 29/72 (40%)
 Frame = +3

Query: 21  IPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGT 200
           +P     R+  V+  +  ++  +R KE+E      +   + + + R P PP    I    
Sbjct: 207 LPPTPPARITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPP 266

Query: 201 EKPVLLAPIPYE 236
              + L  IP E
Sbjct: 267 PPNIPLPTIPQE 278


>Z68270-11|CAJ90499.1|  394|Caenorhabditis elegans Hypothetical
           protein ZC410.1b protein.
          Length = 394

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 218 CAYPIRIRSVKSNKIFLRTKKKKKNSRGGPVPNSP 322
           C   I +RS + N    R K  + NS   P  NSP
Sbjct: 8   CISTIIVRSKRENFACTRRKDSRNNSDAAPNSNSP 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,332,311
Number of Sequences: 27780
Number of extensions: 125157
Number of successful extensions: 485
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)