Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31324
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    29   0.27 
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   5.8  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   7.7  

>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 29.5 bits (63), Expect = 0.27
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 434 MFFPSWYKTNQSPICSLRATASICSC 357
           +F P  YKTN +PI  L  T ++CSC
Sbjct: 256 IFTPILYKTNNNPII-LPITVTVCSC 280


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 358 VAQGDCVRAASRDGRGVQRQRPCGIT-KKFHS 266
           +A+ +CV     DG  + RQ+  G+  K+FHS
Sbjct: 471 LAETECVWFLVEDGESLLRQKLYGLALKRFHS 502


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 364 ALVAQGDCVRAASRDGRGVQRQRPCG 287
           A +++  C R   +  +G  RQRPCG
Sbjct: 335 AAISRSRCSRC-KKSKKGCDRQRPCG 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,080,194
Number of Sequences: 5004
Number of extensions: 41982
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)