Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31324
         (471 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3112| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.64 
SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)                   29   1.5  
SB_2092| Best HMM Match : RVT_1 (HMM E-Value=0.00047)                  29   1.5  
SB_41251| Best HMM Match : Nsp1_C (HMM E-Value=0.23)                   28   3.4  
SB_13870| Best HMM Match : Nsp1_C (HMM E-Value=0.23)                   27   5.9  
SB_22802| Best HMM Match : Dynein_heavy (HMM E-Value=0.0034)           27   7.8  
SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074)                   27   7.8  

>SB_3112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +3

Query: 261 YPEWNFFVIPHGRCRWTPRPSLLAARTQSPCATRANRSRSPQATDRRLVRFVPTRE 428
           Y  W  F   +GRC WTP   + +  ++S   +R++R    +  D+  V  +PTRE
Sbjct: 87  YRRWKLF---YGRCSWTPAGLVRSVTSKSIPMSRSSRYPCHKHVDQSDV-VLPTRE 138


>SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)
          Length = 545

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 150 IRSIRYGAEIRWLVCFAIEYRQREDLRVPLVLVYDTIYPEWN 275
           I  I Y ++  W+  ++  Y+  E  + P V +YD+   EWN
Sbjct: 480 IEGIAYDSKREWVYIYSKAYKHLEKYKYPNVQIYDS---EWN 518


>SB_2092| Best HMM Match : RVT_1 (HMM E-Value=0.00047)
          Length = 712

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
 Frame = +1

Query: 16  WTSFWTENFQLMAVTWSASQKWSPRERVDPMARVFPKVTKCTF----HKYGPSGTVQ 174
           W S W   +  ++  W +   W  R RV   A        CTF    H+ G + T++
Sbjct: 529 WFSVWRNTYGGLSTNWESDLLWKIRHRVVRTASFLTSHMHCTFSPKCHRCGRTETLK 585


>SB_41251| Best HMM Match : Nsp1_C (HMM E-Value=0.23)
          Length = 251

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = -3

Query: 460 SVLYKSVDQCSSRVGTKRTSRRSVACGLRLRFALVAQGDCVRAASRDGRGVQRQRPCGIT 281
           ++L  S+ +C     ++   RR +   LR   A++ Q        R  RG+ R +  G++
Sbjct: 80  ALLEHSLPECCFCFSSEDNVRREINDSLRKNCAIIVQ------KYRASRGMARMKLDGLS 133

Query: 280 KKFH 269
           KKFH
Sbjct: 134 KKFH 137


>SB_13870| Best HMM Match : Nsp1_C (HMM E-Value=0.23)
          Length = 251

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = -3

Query: 460 SVLYKSVDQCSSRVGTKRTSRRSVACGLRLRFALVAQGDCVRAASRDGRGVQRQRPCGIT 281
           ++L  S+ +C     +    RR +   LR   A++ Q        R  RG+ R +  G++
Sbjct: 80  ALLEHSLPECCFCFSSDDNVRREINDSLRKNCAIIVQ------KYRASRGMARMKLDGLS 133

Query: 280 KKFH 269
           KKFH
Sbjct: 134 KKFH 137


>SB_22802| Best HMM Match : Dynein_heavy (HMM E-Value=0.0034)
          Length = 504

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 210 RQREDLRVPLVLVYDTIYPEWNFF 281
           R+ E+L+V L  + D++  EW FF
Sbjct: 118 RKEEELKVQLAEMEDSLLEEWEFF 141


>SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 177 FLHRTGWTVFMEGAFSYFRKH 115
           FL  TG ++FME + SYF++H
Sbjct: 141 FLTATGDSIFMEISASYFQRH 161


>SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074)
          Length = 1087

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 312 PRPSLLAARTQSPCATRANRSRSPQATDRRLVRF 413
           P P ++   T +   TR +   SP++T R  VRF
Sbjct: 9   PGPEMIPKSTPTDPRTRNDTEESPKSTPRNCVRF 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,856,497
Number of Sequences: 59808
Number of extensions: 333274
Number of successful extensions: 1042
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)