Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31324
         (471 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   1.6  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   6.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.8  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 298 RPCGITKKFH 269
           RPCGIT  FH
Sbjct: 337 RPCGITLTFH 346


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 210 RQREDLRVPLVLVYDTIYPEW 272
           RQ  ++R P+V   DT+  EW
Sbjct: 336 RQENNIR-PMVKQIDTVAAEW 355


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +3

Query: 309 TPRPSLLAARTQSPCATRANRSRSPQATDRR 401
           TPR +    +   P   R   +  P+ATD R
Sbjct: 144 TPRINFTKLKRHHPRYKRPRTTFEPRATDSR 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,611
Number of Sequences: 438
Number of extensions: 2982
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)