Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31323
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   5.6  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   7.3  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    25   9.7  
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p...    25   9.7  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 137  GTLQKTDDSCVNFVEGTGGYVFSSTNFEKLNAPQQKQFIQTAANTITHKLLS 292
            G L   D    + +E +   + S  N    N P+ KQ+I    N +  KL++
Sbjct: 3721 GLLDSYDCYLSSLLETSNAKISSRPNVLMPNQPEVKQYIPNVWNDVLKKLIT 3772


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 20  TPDLKIGGGKNLNQVVGFSEHSVVLLGE 103
           TPD  +GG K+L Q V   E+  +LLG+
Sbjct: 507 TPD--VGGTKSLEQYVNGWENRTLLLGD 532


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 426 DEMILTSRCSYFRLREASFLSLFTQTERTLN 334
           DE++    C YF     +F   + +T R LN
Sbjct: 335 DEILWAKTCMYFTRGSLTFAEAYKRTGRILN 365


>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 227 NAPQQKQFIQTAANTITHKLLSEQLSQLCTCTYVDPFRVR 346
           NA  Q + +Q AAN ++    S  +   CT  Y   F  R
Sbjct: 218 NADHQLELLQQAANMMSESRFSLLVVDSCTALYRTDFSGR 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,817,815
Number of Sequences: 5004
Number of extensions: 31060
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)