Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31323
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81049-4|CAJ76935.1|  496|Caenorhabditis elegans Hypothetical pr...    31   0.72 
Z81049-3|CAB02846.2|  631|Caenorhabditis elegans Hypothetical pr...    31   0.72 
AL031633-10|CAA21024.1|  387|Caenorhabditis elegans Hypothetical...    28   3.9  

>Z81049-4|CAJ76935.1|  496|Caenorhabditis elegans Hypothetical
           protein C48D1.1b protein.
          Length = 496

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
 Frame = +2

Query: 47  KNLNQVVGFSEHSVVLLGEKKQTKDSETLRGTLQKTDDS---CVNFVEGTGGYVFSSTNF 217
           +N+N++V   E SV   G+K +TK SE    T++ T+ S   C N ++  G    S +  
Sbjct: 346 ENVNRLVDILEWSV---GQKNETKLSEFFEITIKMTEKSSKACTNMIQ-AGIISISLSCM 401

Query: 218 EKLNAPQQKQFIQTAANTITHKLLSEQLSQLCTCTYVD 331
           EK+ +             ++  L  + L +L T + VD
Sbjct: 402 EKVESNDITTKCLELLTNLSSALNYDSLQELYTSSNVD 439


>Z81049-3|CAB02846.2|  631|Caenorhabditis elegans Hypothetical
           protein C48D1.1a protein.
          Length = 631

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
 Frame = +2

Query: 47  KNLNQVVGFSEHSVVLLGEKKQTKDSETLRGTLQKTDDS---CVNFVEGTGGYVFSSTNF 217
           +N+N++V   E SV   G+K +TK SE    T++ T+ S   C N ++  G    S +  
Sbjct: 481 ENVNRLVDILEWSV---GQKNETKLSEFFEITIKMTEKSSKACTNMIQ-AGIISISLSCM 536

Query: 218 EKLNAPQQKQFIQTAANTITHKLLSEQLSQLCTCTYVD 331
           EK+ +             ++  L  + L +L T + VD
Sbjct: 537 EKVESNDITTKCLELLTNLSSALNYDSLQELYTSSNVD 574


>AL031633-10|CAA21024.1|  387|Caenorhabditis elegans Hypothetical
           protein Y39A1A.13 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 188 GGYVFSSTNFEKLNAPQQKQFIQTAANTITH 280
           G +VF   + +KL  PQQ++F+ T  +  TH
Sbjct: 101 GYFVFLVRDADKLITPQQQKFLYTMVDKATH 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,325,127
Number of Sequences: 27780
Number of extensions: 184297
Number of successful extensions: 500
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)