Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31322
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1130 + 24517319-24518149,24519374-24519868,24519954-245201...    28   5.4  
11_06_0053 + 19667076-19667774,19668001-19669803,19669911-19669928     27   9.4  
07_01_0316 + 2226010-2226256,2226956-2227047,2227143-2227180,222...    27   9.4  

>08_02_1130 +
           24517319-24518149,24519374-24519868,24519954-24520179,
           24520267-24520291,24520925-24521234,24521328-24521888
          Length = 815

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 136 IHKVISGDPLRLILGYENRQRVIYLHNM 53
           I+K  + DP+R  L  +NR+R++YL  +
Sbjct: 303 IYKRKNSDPIRYSLLEKNRERIVYLQKL 330


>11_06_0053 + 19667076-19667774,19668001-19669803,19669911-19669928
          Length = 839

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 255 NRNCRTISYVMFCLYFNLH*STLYESP 175
           NR+CR I   +   Y NLH +++ E P
Sbjct: 510 NRHCRDICNTLHLRYLNLHRTSISEIP 536


>07_01_0316 +
           2226010-2226256,2226956-2227047,2227143-2227180,
           2227289-2227450,2227540-2227562,2227673-2227744,
           2227858-2228025,2228318-2228400,2228533-2228595,
           2228735-2228917
          Length = 376

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 81  RFSYPRMRRRGSPLMTLCIVYSIIILIAEL 170
           R +Y RM++RG PL    + YS+I    EL
Sbjct: 216 RDAYARMKKRGVPLAANQVNYSLIYRTPEL 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,627,236
Number of Sequences: 37544
Number of extensions: 165660
Number of successful extensions: 227
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)