Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31322
         (532 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57086| Best HMM Match : PT (HMM E-Value=2.4)                        32   0.33 
SB_56861| Best HMM Match : Gemini_V1 (HMM E-Value=2.4)                 29   3.1  
SB_56230| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  

>SB_57086| Best HMM Match : PT (HMM E-Value=2.4)
          Length = 226

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 176 QYQLSYKYYYTIDYT*SHQRRSPASHPWVRKSSESYLST*YVH 48
           QY   Y + YT  YT  HQ   P +HP+  + +  Y    Y H
Sbjct: 57  QYTHQYTHQYTHQYT--HQYTHPYTHPYTHQYTHQYTHHQYTH 97


>SB_56861| Best HMM Match : Gemini_V1 (HMM E-Value=2.4)
          Length = 113

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 65  INNSLTIFVPKD-ETQGIAADDFMYSL*YNNTY 160
           +NNSL+ F  +D E Q +  D F  +L YNNTY
Sbjct: 18  VNNSLSSFNVRDFERQSLPQDPFQ-NLPYNNTY 49


>SB_56230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 996

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 65  INNSLTIFVPKD-ETQGIAADDFMYSL*YNNTY 160
           +NNSL+ F  +D E Q +  D F  +L YNNTY
Sbjct: 669 VNNSLSSFNVRDFERQSLPQDPFQ-NLPYNNTY 700


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,051,337
Number of Sequences: 59808
Number of extensions: 220067
Number of successful extensions: 379
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)