Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31321
(402 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0021 - 155700-156023 44 5e-05
11_01_0023 - 162079-162402 44 5e-05
01_05_0378 + 21628517-21628759 35 0.028
12_01_0474 + 3718846-3719097 31 0.26
03_02_0738 - 10824121-10825572 27 4.2
11_06_0372 + 22781438-22781977 27 7.3
11_06_0119 + 20321687-20323624 26 9.7
09_04_0385 + 17167174-17167440,17173321-17173962 26 9.7
02_01_0052 + 392339-392395,392604-393400,393520-393634,393831-39... 26 9.7
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 26 9.7
>12_01_0021 - 155700-156023
Length = 107
Score = 44.0 bits (99), Expect = 5e-05
Identities = 27/94 (28%), Positives = 38/94 (40%)
Frame = +1
Query: 85 SPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXXGSGGMWRFYTDD 264
S S +SVG+ + + A+ GPR + G M RFYTD+
Sbjct: 6 SQSQSSVGAAAGAARPATVGPRGTAAAAAGMRRRRASTAGGSGGFSGGGGSNMLRFYTDE 65
Query: 265 SXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 366
+ MSL FI V LH++GK R+
Sbjct: 66 APGLRLSPTMVLVMSLCFIGFVTALHVFGKLYRS 99
>11_01_0023 - 162079-162402
Length = 107
Score = 44.0 bits (99), Expect = 5e-05
Identities = 27/94 (28%), Positives = 38/94 (40%)
Frame = +1
Query: 85 SPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXXGSGGMWRFYTDD 264
S S +SVG+ + + A+ GPR + G M RFYTD+
Sbjct: 6 SQSQSSVGASAGAARPATVGPRGTAAAAAGMRRRRASTAGGSGGFSGGGGSNMLRFYTDE 65
Query: 265 SXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTRA 366
+ MSL FI V LH++GK R+
Sbjct: 66 APGLRLSPTMVLVMSLCFIGFVTALHVFGKLYRS 99
>01_05_0378 + 21628517-21628759
Length = 80
Score = 34.7 bits (76), Expect = 0.028
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 229 GSGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTR 363
G+ M +FYTD++ MS+ FIA V +LH++GK R
Sbjct: 33 GASTMLQFYTDEAAGRKMSPNSVLIMSIGFIAVVALLHVFGKLYR 77
>12_01_0474 + 3718846-3719097
Length = 83
Score = 31.5 bits (68), Expect = 0.26
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 229 GSGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTR 363
G+ M +FYT+++ MS+ F A V +LH++GK R
Sbjct: 35 GTSTMLQFYTEEAAGCKMSPNAVLIMSIGFFAVVALLHVFGKLYR 79
>03_02_0738 - 10824121-10825572
Length = 483
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -3
Query: 310 ETSLKQELAPL*LQENHRYRTSTFLQNQHQCFGFWLQL 197
E + L L + + HR+ FL+N + GFW +
Sbjct: 330 EADDQSALVFLLVTQRHRWGAKVFLENSYNLHGFWADI 367
>11_06_0372 + 22781438-22781977
Length = 179
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 91 SATSVGSGSRSPTKASAGPRTA 156
S GSGSRSP+KA+ P A
Sbjct: 3 SGDEEGSGSRSPSKAAPAPAPA 24
>11_06_0119 + 20321687-20323624
Length = 645
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +3
Query: 180 KINYYYNCSQKPKHWCWFWRNVEVLY 257
K++ YN +P CWFW + Y
Sbjct: 243 KLDLSYNNFNQPLASCWFWNLTSLTY 268
>09_04_0385 + 17167174-17167440,17173321-17173962
Length = 302
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 76 MPQSPSATSVGSGSRSPTKASAGPR 150
+P PSAT+ RS + AS+ PR
Sbjct: 146 LPPEPSATTSSGNDRSSSSASSPPR 170
>02_01_0052 +
392339-392395,392604-393400,393520-393634,393831-393926,
394008-394079,395286-395381
Length = 410
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 174 STKINYYYNCSQKPKHWCWFWRNVEVL 254
S +++Y + S + K W WRN+++L
Sbjct: 96 SGHVDHYQSLSSEDKGWGCGWRNIQML 122
>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 26.2 bits (55), Expect = 9.7
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 288 SSCFSDVSPVYCIGI 332
+SCFSDV+P+ C+ +
Sbjct: 1850 ASCFSDVTPLSCLSV 1864
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,401,089
Number of Sequences: 37544
Number of extensions: 161318
Number of successful extensions: 413
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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