Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31321
         (402 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   1.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   4.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.9  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 222 WCWFWRNVEVLY 257
           WC  WR+++VL+
Sbjct: 118 WCDVWRSLDVLF 129


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = +3

Query: 213 PKHWCWFWRNVEVLY 257
           P H+ W +++  +LY
Sbjct: 139 PNHYLWLYKDKTILY 153


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 153  SQW*YSPSTKINYYYNCSQKPK 218
            SQ   SP T ++Y     QKPK
Sbjct: 1245 SQIMVSPETLLSYDEKMDQKPK 1266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,909
Number of Sequences: 438
Number of extensions: 1880
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)