Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31320
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.70 
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    27   1.6  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   8.6  

>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 493 DNDVAPESYHYLYETENKI 549
           DND+ PE Y  LYE E+K+
Sbjct: 132 DNDLEPEVYDILYEEESKL 150


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 112 KPGRYVADPGRYDPSRDN 165
           KPG YV+D   Y P +DN
Sbjct: 235 KPGSYVSDRASYTPQQDN 252


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 524 TCTRPRTKFSLKKPARSRTLAPKTKASRS 610
           T  RP  K +LK P  S + AP++ +S +
Sbjct: 500 TVCRPHKKVTLKMPLNSGSSAPQSPSSNT 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.133    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,274
Number of Sequences: 5004
Number of extensions: 35766
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)