Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31320
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0049 - 15422996-15423407,15423954-15424114                       29   2.2  
05_03_0353 - 12856385-12857705,12858007-12858959                       28   6.7  
03_05_0736 - 27254502-27255497                                         28   6.7  
03_03_0192 - 15308602-15308869,15309457-15309528,15310271-153103...    28   6.7  
03_02_0438 + 8470290-8470378,8470900-8470990,8471074-8471134,847...    28   6.7  
02_01_0428 - 3127098-3129254                                           27   8.9  
01_05_0679 + 24230740-24230929,24231330-24231461,24231710-242319...    27   8.9  

>01_04_0049 - 15422996-15423407,15423954-15424114
          Length = 190

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 405 QGGHTHIRCQQGGPTQRRRLRLQIRDHPLRQ*RRSRKLPL 524
           Q      RC QG P+ RRR+R   +D  + Q R  R +PL
Sbjct: 83  QAARGSTRCSQGCPSDRRRVRGAAQDATI-QGRHCRSVPL 121


>05_03_0353 - 12856385-12857705,12858007-12858959
          Length = 757

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 390 GCDWHGNGRLHDGQGNNAGSLVSITKVFAEVL 295
           GC+W   G    GQ   A S VS T    E+L
Sbjct: 172 GCEWSDPGFFLRGQEEEASSSVSTTTAMEEIL 203


>03_05_0736 - 27254502-27255497
          Length = 331

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +2

Query: 515 ATTTCTRPR--TKFSLKKPARSRTLAPKTKASRS 610
           ATTT + P+  T+F+L + ARS T  P +K+  S
Sbjct: 14  ATTTLSSPQLCTQFALDRVARSTTTIPLSKSKSS 47


>03_03_0192 -
           15308602-15308869,15309457-15309528,15310271-15310337,
           15310449-15310528,15310636-15310714,15310815-15310890
          Length = 213

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 426 RCQQGGPTQRRRLRLQIRDHPLRQ*RRSRKLPLLVRDRE-QNSR*KNRQGRERWHRK 593
           R +   P+ +RR R   RD   R   R R      +DRE + SR   R  RER+  K
Sbjct: 114 RGRSRSPSPKRRYRADYRDRGYRDDYRDRHYRDDYQDREYRRSRSIERYERERYQEK 170


>03_02_0438 +
           8470290-8470378,8470900-8470990,8471074-8471134,
           8471678-8471755,8471891-8471964,8472689-8472802,
           8472881-8472988,8473937-8473975,8474046-8474132
          Length = 246

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/51 (21%), Positives = 29/51 (56%)
 Frame = +3

Query: 453 RRRLRLQIRDHPLRQ*RRSRKLPLLVRDREQNSR*KNRQGRERWHRKRKHQ 605
           +++L +++R+    +  R RK+ + + + E   +    + +E W +KR+H+
Sbjct: 145 QKQLIIKVREILTDKEWRRRKMQMRISEEEGRLKKDEEETKEMWKKKREHE 195


>02_01_0428 - 3127098-3129254
          Length = 718

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 412 VTPTYVASKVVPPSGAGYDYKYGIIRYDNDVAPESY 519
           + PTY++SK   P+   + Y+Y I+R + +VA   +
Sbjct: 527 ILPTYMSSKKDLPALKDWKYEYRILRAEVNVARNGF 562


>01_05_0679 +
           24230740-24230929,24231330-24231461,24231710-24231977,
           24232170-24232388,24233538-24233673,24233899-24234147,
           24234783-24235100
          Length = 503

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 451 WVGPPCWQRMWV*P 410
           W    CWQRMWV P
Sbjct: 14  WPTASCWQRMWVHP 27


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.133    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,162,115
Number of Sequences: 37544
Number of extensions: 291086
Number of successful extensions: 682
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)