Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31320
         (611 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.97 
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                31   0.97 
SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)                   29   3.0  
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    29   3.0  
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)                   29   3.0  
SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)                   29   3.9  
SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)                 29   3.9  
SB_49880| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)                    28   5.2  
SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)                    28   5.2  
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)                  28   6.9  
SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3)                     27   9.1  

>SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1299

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
 Frame = +3

Query: 321  CLQGIQHCSPARREAYHSRASHTH-IRCQQ--GGHTHIRCQQGGPTQRRRLRLQIRDHPL 491
            CL    H     R   H   S TH +R  +  G H   + ++    +RRR R + R    
Sbjct: 996  CLHSDTHTVHIARRT-HGTNSDTHALRTYRHAGSHERRKRKRRRKRKRRRKRKRRRKRKR 1054

Query: 492  RQ*RRSRKLPLLVRDREQNSR*KNRQGRERWHRKRKHQ 605
            R+ R+ R+     R R++  + + R+ R+R  RKRK +
Sbjct: 1055 RRKRKRRRKRKRRRKRKRRRKRQRRRKRKR-RRKRKRR 1091


>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 1021

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 73  YNRVYSTVSPFVYKPGR---YVADPGRYDPSRDNSGRYIP 183
           YNR+ +   P++ +PGR   Y   PGR DP     GR  P
Sbjct: 670 YNRLQARDDPYIKQPGRDDPYNKQPGRDDPYIKQPGRDDP 709


>SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 384 HTHIRCQQGGHTHIRCQQGGPTQRRRLRLQIRDH 485
           H+HIR     HTHIR      TQ   +RL +  H
Sbjct: 140 HSHIRLPSTQHTHIRLHS---TQHTHIRLHLTQH 170



 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +3

Query: 384 HTHIRCQQGGHTHIRCQQGGPTQRRRLRLQIRDH 485
           HTHIR     HTHIR      TQ   +RL    H
Sbjct: 210 HTHIRLPSTQHTHIRLPS---TQHSHIRLPSTQH 240



 Score = 28.3 bits (60), Expect = 5.2
 Identities = 21/59 (35%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
 Frame = +3

Query: 324 LQGIQHCSPARREAYHSR-----ASHTHIRCQQGGHTHIRCQQGGPTQRRRLRLQIRDH 485
           L  IQH         HS        HTHIR     HTHIR      TQ   +RL    H
Sbjct: 175 LPSIQHSRIRLPSIQHSHIRLPSTQHTHIRLPLTQHTHIRLPS---TQHTHIRLPSTQH 230



 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +3

Query: 384 HTHIRCQQGGHTHIRCQQGGPTQRRRLRLQIRDH 485
           HTHIR     HTHIR      TQ   +RL    H
Sbjct: 150 HTHIRLHSTQHTHIRLHL---TQHSHIRLPSIQH 180


>SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)
          Length = 759

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +3

Query: 387 THIRCQQGGHT---HIRCQQGGPTQRRRLR 467
           T IRC+ GG T    IRC+ GG T   R+R
Sbjct: 601 TSIRCRSGGGTCVTRIRCRSGGGTCVTRIR 630


>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 528 VRDREQNSR*KNRQGRERWHRKRKHQ 605
           +R+R  +S  ++R GRE W  K KH+
Sbjct: 320 LRERISSSEHRHRDGRESWREKPKHR 345


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 465 RLQIRDHPLRQ*RRSRKLPLLVRDREQNSR*KNRQGRERWHRKRKHQ 605
           R  +R  P+R+ RR R+     R R++  R + R+   R  R+RK +
Sbjct: 474 RFLVRRRPIRRQRRRRRRRRRRRRRQRRRRRRRRRRNRRKRRRRKRR 520



 Score = 28.3 bits (60), Expect = 5.2
 Identities = 22/53 (41%), Positives = 30/53 (56%)
 Frame = +3

Query: 450 QRRRLRLQIRDHPLRQ*RRSRKLPLLVRDREQNSR*KNRQGRERWHRKRKHQG 608
           +RRRLR +IR    R+ RR RKL    R R +  R + R+G  R  R R+ +G
Sbjct: 372 RRRRLR-RIRRRRRRRRRRRRKLRR--RRRRRPLRRRRRRGGRRRRRGRQGRG 421



 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = +3

Query: 450 QRRRLRLQIRDHPLRQ*RRSRKLPLLVRDREQNSR*KNRQGRERWHRKRKHQ 605
           +RR+ R Q R    R+ RR R+   L R R +  R + R+ R+R  R+R+++
Sbjct: 689 RRRKRRRQRRSRRRRRRRRRRRRSQLRRKRRRKVRARRRK-RQRILRRRRYR 739


>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
          Length = 509

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/62 (27%), Positives = 24/62 (38%)
 Frame = +3

Query: 339 HCSPARREAYHSRASHTHIRCQQGGHTHIRCQQGGPTQRRRLRLQIRDHPLRQ*RRSRKL 518
           HC   R   +H  + H H  C +  + H   +        RLRL I  HP  +     +L
Sbjct: 250 HCHRPRLSNHHRPSRHLHCHCPRLSNHH---RLSRHLHSNRLRLSIHHHPSSRHHHCHRL 306

Query: 519 PL 524
            L
Sbjct: 307 RL 308


>SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)
          Length = 516

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = +1

Query: 412 VTPTYVASKVVPPSGAGYDYKYGIIRYDNDVAPESYHYLYETENKILAEKTGKVENVG 585
           + P  V +K   P G   DY Y +   D  +A   YH L   E      +   +E++G
Sbjct: 186 IAPISVVNKF--PPGTVVDYAYNVFYQDRKIAHTPYHALTVGERDCYNARRDMLEHLG 241


>SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)
          Length = 420

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 1   VFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKP 117
           VFL   +S+TV + +  GKY P  YN   + ++ F + P
Sbjct: 132 VFLVWGISITVGVLSVVGKYEPLAYN--VTVIALFFFLP 168


>SB_49880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 447 TQRRRL-RLQIRDHPLRQ*RRSRKLPLLVRDREQNSR*KNRQGRERW 584
           T RRR+ RL  +   +RQ R   +L +L R +++ +R    QGR RW
Sbjct: 297 TYRRRIPRLLEQQRQIRQQRLPERLAILRRVKQEGNR--QVQGRGRW 341


>SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 251 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 340
           PVL     +P S PRR S     +LTR PA
Sbjct: 111 PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 140


>SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 438 LAGNVCGCDPLAGNVCGCDWHGNGRLHDGQGNNAGSLVSITKV 310
           L GN CG   L GN CG   +GN       GN +G+   +  V
Sbjct: 238 LYGNKCGTS-LYGNKCGTSLYGNKSGTSLYGNKSGNPPDVVAV 279


>SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)
          Length = 304

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 251 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 340
           PVL     +P S PRR S     +LTR PA
Sbjct: 86  PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 115


>SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)
          Length = 877

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
 Frame = -3

Query: 423 CG-CDPL---AGNVCGCDWHGNGRL-HDGQGN 343
           CG CD     AG V  CDW G+G L  D +GN
Sbjct: 667 CGPCDVAVDSAGRVIACDWSGDGVLVFDSRGN 698


>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
          Length = 425

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 429 NVCGCDPLAGNVCGCDWHGNGRL 361
           N  GC+   GN  GC++ G+ R+
Sbjct: 382 NTMGCEFQGGNTMGCEFQGDSRI 404


>SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3)
          Length = 509

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 450 GWDHLAGNVCGCDPLAGNVCGCDWHGNGRLHDGQG 346
           G D   G+   CD   G+  GC   GNG + D +G
Sbjct: 398 GCDDDGGDDSSCDDDGGDDSGCYDDGNGSVFDDEG 432


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.312    0.133    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,869,307
Number of Sequences: 59808
Number of extensions: 328876
Number of successful extensions: 883
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)