Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31320
(611 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 31 0.65
Z46828-1|CAA86856.1| 542|Caenorhabditis elegans Hypothetical pr... 31 0.65
Z75546-6|CAA99894.1| 155|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 28 6.0
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical pr... 27 8.0
U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein. 27 8.0
L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell m... 27 8.0
L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell m... 27 8.0
L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell m... 27 8.0
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 31.1 bits (67), Expect = 0.65
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Frame = +2
Query: 389 PHTLPARGSHPHTLPARWSHPAAPAXXXXXXXXXXXXXXLPKATTTCTR-PRTKFSLKKP 565
P T+P R P T P R P A P+ T PRT+ + +P
Sbjct: 561 PRTIPPRTEAPRTEPPRTEPPKTEAPRTVRPKTEAPMTVPPRTEPPMTEAPRTEVPMTEP 620
Query: 566 ARS---RTLAPKTKAS 604
++ RT P+T+ S
Sbjct: 621 PKTEPPRTAPPRTEVS 636
>Z46828-1|CAA86856.1| 542|Caenorhabditis elegans Hypothetical
protein R03D7.2 protein.
Length = 542
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = +3
Query: 345 SPARREAYHSRASHTHIRCQQGGHTHIRCQQGGPTQRRRLRLQIRDHPLRQ 497
SP RR+ +HSR+S +I H+ +R ++ +QR++L+ Q + LR+
Sbjct: 21 SPHRRQPHHSRSSSNNI--SSSLHSRLRRRRRSRSQRKQLQWQQQQLRLRK 69
>Z75546-6|CAA99894.1| 155|Caenorhabditis elegans Hypothetical
protein R05D11.7 protein.
Length = 155
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +3
Query: 426 RCQQGGPTQRRRLRLQIRDHPLRQ*RRSRKLPLLVRDREQNSR*KNRQGRERWHRKRKHQ 605
R ++ ++ RR + RD ++ RSR P RDR + SR ++R+ R+R +K+ +
Sbjct: 22 RRRERSRSRERRDARKNRDEKEKRSSRSRS-PRDKRDRRERSRSRDRKERDRERQKKDRE 80
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 27.9 bits (59), Expect = 6.0
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +3
Query: 426 RCQQGGPTQRRRLRLQIRDHPLRQ*RRSRKLPLLVRDREQNSR*KNRQGRERWHRKRKHQ 605
R + P +RR R + RD R RRSR RDR+++ K + R+R R R
Sbjct: 280 RRRSPSPRRRRDSRDRDRDRD-RDRRRSRDRRSRSRDRDRDRDRKRSRSRDRKRRSRSRD 338
Query: 606 GQ 611
+
Sbjct: 339 NK 340
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 27.9 bits (59), Expect = 6.0
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +3
Query: 426 RCQQGGPTQRRRLRLQIRDHPLRQ*RRSRKLPLLVRDREQNSR*KNRQGRERWHRKRKHQ 605
R + P +RR R + RD R RRSR RDR+++ K + R+R R R
Sbjct: 280 RRRSPSPRRRRDSRDRDRDRD-RDRRRSRDRRSRSRDRDRDRDRKRSRSRDRKRRSRSRD 338
Query: 606 GQ 611
+
Sbjct: 339 NK 340
>Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical
protein E02H4.1 protein.
Length = 664
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 123 AAWLIDEWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKD 1
+AW D + +N + E + LS+ Q+HC+ CQ+D
Sbjct: 501 SAWC-DSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQD 540
>U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein.
Length = 664
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 123 AAWLIDEWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKD 1
+AW D + +N + E + LS+ Q+HC+ CQ+D
Sbjct: 501 SAWC-DSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQD 540
>L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell
migration protein10, isoform b protein.
Length = 650
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 39 GRRNWKVHSFPVQPSLLY 92
GR++WK H F ++PS LY
Sbjct: 340 GRKSWKKHYFVLRPSGLY 357
>L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell
migration protein10, isoform a protein.
Length = 667
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 39 GRRNWKVHSFPVQPSLLY 92
GR++WK H F ++PS LY
Sbjct: 357 GRKSWKKHYFVLRPSGLY 374
>L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell
migration protein10, isoform c protein.
Length = 779
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 39 GRRNWKVHSFPVQPSLLY 92
GR++WK H F ++PS LY
Sbjct: 469 GRKSWKKHYFVLRPSGLY 486
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.312 0.133 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,008,464
Number of Sequences: 27780
Number of extensions: 220785
Number of successful extensions: 638
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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