Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31319
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375... 30 1.2
12_02_0674 - 21745321-21746223,21746229-21747608 30 1.6
11_04_0306 + 16176873-16177124,16178155-16179152,16179204-161793... 29 2.2
09_03_0177 - 13120816-13120941,13121032-13121137,13121231-131213... 29 2.2
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 29 2.2
02_03_0134 - 15596379-15597689 29 2.2
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315 29 2.9
01_01_0038 + 288522-288572,289395-289512,289790-289809,290077-29... 28 5.0
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 28 6.7
>02_05_0008 +
24934917-24935229,24936387-24936608,24936876-24937591,
24937646-24937728,24938448-24938514,24938833-24939228,
24939276-24939318,24939380-24939474,24940287-24940314,
24940636-24940754
Length = 693
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -3
Query: 570 EVDGVEGIEVEMVKECAHFVDFDVGNFQTNEVKSFLCVWYLVLFKFD--DVLTNPFIELV 397
E+ ++ EV ++K C F F + Q + +LC+ ++VL + D + +V
Sbjct: 409 ELSRLDNPEVSLIKACLVFTTFSMALVQKCRLTQYLCLVFIVLVDYGKCDCYVLCLVHMV 468
Query: 396 EG 391
+G
Sbjct: 469 QG 470
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 29.9 bits (64), Expect = 1.6
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Frame = +2
Query: 2 LFELATSRL-STPFTIHLPK---EAMTTSCTARRTTKKF-ASSTFMRRHSSNTSSKVTSR 166
L +TS++ STP T L + +T+CT+ +T SST S ++SK +S
Sbjct: 548 LLSSSTSKIPSTPSTCELSTATGKIPSTTCTSPLSTATGKTSSTPSTSPLSTSTSKTSST 607
Query: 167 PSTKKLICTVAKQSTLWATTGRRTP 241
PST L + K T T TP
Sbjct: 608 PSTSPLSSSTIKIPTTARTGELSTP 632
>11_04_0306 +
16176873-16177124,16178155-16179152,16179204-16179339,
16179448-16179597,16179711-16179891,16181139-16181298,
16182156-16182378
Length = 699
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 131 HSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIY 247
H TS+ + PSTK L+C+ +Q+ L + R P+Y
Sbjct: 583 HLDTTSTSINLHPSTKLLLCS-QEQAGLKFSLSRACPLY 620
>09_03_0177 -
13120816-13120941,13121032-13121137,13121231-13121305,
13121385-13121461,13122462-13122549,13122638-13122699,
13122807-13122863,13122960-13123049,13123186-13123251,
13123530-13123619,13123711-13123804,13123915-13124213
Length = 409
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 391 AFYQLYKRIGQYIIEFKQYQVPYTQEALHFVGLKI 495
A+ K ++ EF+ ++ P+ EA+H V L+I
Sbjct: 91 AYSSFEKAANAFLQEFRNWETPWAMEAMHTVALEI 125
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +2
Query: 8 ELATSRLSTPFTIHL-----PKEAMTTSCTARRTTKKFASSTFMRRHSSNTSSKVTSR 166
E TSRL +I L P+E+ +T CT R ++ F M+ + S+ S+K R
Sbjct: 78 EPKTSRLDVKKSISLILGISPEESTSTPCTGRNSSLPFEEIRRMKNNLSDISNKARER 135
>02_03_0134 - 15596379-15597689
Length = 436
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +2
Query: 80 TARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTG 229
TAR + K + T + S+ S ++SRP K+ + AKQ T AT G
Sbjct: 121 TARNRSSKDMNRT-AKSSSAMQKSNLSSRPGVDKMAASSAKQRTQKATPG 169
>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
Length = 678
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 134 SSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTSV 280
+S ++S ++RP+T CT A T +P +K+TSS S+SV
Sbjct: 635 ASRSASPTSARPATSSWTCTS-------AATASASPATAKRTSSTSSSV 676
>01_01_0038 +
288522-288572,289395-289512,289790-289809,290077-290109,
290648-290779,290859-290948,291402-291527
Length = 189
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 371 KLRPGTQPSTSSIKGLVNTS-SNLNSTRYHTHKKLFT 478
+L P +PSTS+ KGL+ L S+R ++H LF+
Sbjct: 4 RLAPSARPSTSATKGLITGGVILLVSSRKNSHNFLFS 40
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 27.9 bits (59), Expect = 6.7
Identities = 23/81 (28%), Positives = 36/81 (44%)
Frame = +2
Query: 32 TPFTIHLPKEAMTTSCTARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQST 211
TP LPK T S + R ++ S T N S +RP+ + + QST
Sbjct: 35 TPSPNILPKRTATRSSSTTRASRLSVSQT------ENGHSTAPTRPARSNSVTRPSIQST 88
Query: 212 LWATTGRRTPIYSKKTSSNST 274
L +++ RT + + SS S+
Sbjct: 89 LMSSS-NRTAVLNTSISSVSS 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,959,540
Number of Sequences: 37544
Number of extensions: 293592
Number of successful extensions: 760
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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