Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31319
         (608 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D28118-1|BAA05663.1|  516|Homo sapiens DB1 protein.                    33   0.79 
AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.              32   1.8  
X74955-1|CAA52910.1|  622|Homo sapiens mucin protein.                  30   7.3  
M64594-1|AAA63230.1|  610|Homo sapiens mucin protein.                  29   9.7  
EF158822-1|ABM45857.2|   89|Homo sapiens MHC class II antigen pr...    29   9.7  

>D28118-1|BAA05663.1|  516|Homo sapiens DB1 protein.
          Length = 516

 Score = 33.1 bits (72), Expect = 0.79
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
 Frame = +2

Query: 44  IHLPKEAMTTSCTARRTTKKFASSTFMRRHSS-NTSSKVTSRP-----STKKLICTVAKQ 205
           I + KE   TS      +K F  S  +RRH S +T  K+ SRP     +   LI T+A  
Sbjct: 63  IGIKKEKPKTSFVCTYCSKAFRDSYHLRRHESCHTGIKLVSRPKKTPTTVVPLISTIAGD 122

Query: 206 STLWATTGRRTPIYSKKTSSNS 271
           S+  +       I S  T+S+S
Sbjct: 123 SSRTSLVSTIAGILSTVTTSSS 144


>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
          Length = 1349

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
 Frame = +2

Query: 17  TSRLSTPFT-IHLPKEAMTTSCTARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICT 193
           TS  STP T I     + TTS     T     +S      +S TSS  TS  S      T
Sbjct: 372 TSTTSTPQTSISSAPTSSTTSAPTSSTISARTTSIISAPTTSTTSSPTTSTTSATTTSTT 431

Query: 194 VAKQSTLWAT--TGRRTPIYSKKTSSNSTS 277
            A  S+  +T  T + +   S  TSS+ T+
Sbjct: 432 SAPTSSTTSTPQTSKTSAATSSTTSSSGTT 461



 Score = 30.3 bits (65), Expect = 5.5
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
 Frame = +2

Query: 14  ATSRLSTPFTIHLPKEAMTTSCTARRTTKKFAS--STFMRRHSSNTSSKVTSRPSTKKLI 187
           +T+  S P T   P  + T++ T   T+    S  ST     SS  +S  TS P+T  + 
Sbjct: 655 STTPASIPSTTSAPTTSTTSAPTTSTTSAPTTSTTSTPQTTTSSAPTSSTTSAPTTSTI- 713

Query: 188 CTVAKQSTLWATTGRRTPIYSKKTSSNSTS 277
            +    ST+ A T   T   +  T+S  TS
Sbjct: 714 -SAPTTSTISAPTTSTTSAPTASTTSAPTS 742



 Score = 29.9 bits (64), Expect = 7.3
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +2

Query: 17   TSRLSTPFTIHLPKEAMTTSCTARRTT-KKFASSTFMRRHSSNTSSKVTSRPSTKKLICT 193
            TS  S P T  +     +T+ T + +T     +ST     +S TSS  TS  S      T
Sbjct: 757  TSTTSAPITSTISAPTTSTTSTPQTSTISSPTTSTTPTPQTSTTSSPTTSTTSAPTTSTT 816

Query: 194  VAKQSTLWATTGRRTPIYSKKTSSNSTS 277
             A   T   T+  +T I S  TSS +++
Sbjct: 817  SA--PTTSTTSTPQTSISSAPTSSTTSA 842



 Score = 29.9 bits (64), Expect = 7.3
 Identities = 25/87 (28%), Positives = 39/87 (44%)
 Frame = +2

Query: 14   ATSRLSTPFTIHLPKEAMTTSCTARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICT 193
            +T+   T  T   P  + TTS    RTT    +ST +   +S TS+  TS  S      T
Sbjct: 1096 STTSAPTTSTTSAPTTS-TTSAPTHRTTSGPTTSTTLAPTTSTTSAPTTSTNSA-PTTST 1153

Query: 194  VAKQSTLWATTGRRTPIYSKKTSSNST 274
            ++  +T   +    + I S  +S+ ST
Sbjct: 1154 ISASTTSTISAPTTSTISSPTSSTTST 1180


>X74955-1|CAA52910.1|  622|Homo sapiens mucin protein.
          Length = 622

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = +2

Query: 17  TSRLSTPFTIHLPKEAMTTSCTARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTV 196
           T+  STP T  +P    +T+ T   T+ K  SS+  R  ++      T+  ST     T 
Sbjct: 525 TNPSSTPGTTPIPPVLTSTATTPAATSSKATSSSSPRTATTLPVLTSTATKSTATSF-TP 583

Query: 197 AKQSTLWAT 223
              STLW T
Sbjct: 584 IPSSTLWTT 592


>M64594-1|AAA63230.1|  610|Homo sapiens mucin protein.
          Length = 610

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 25/87 (28%), Positives = 39/87 (44%)
 Frame = +2

Query: 14  ATSRLSTPFTIHLPKEAMTTSCTARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICT 193
           A++  +TP  +  P  A T   T    T   ++ST    H+++     TS  ST      
Sbjct: 516 ASTGHTTPLHVTSPSSASTGHATPLPVTSPSSAST---SHATSLPVTDTSSASTGHATPL 572

Query: 194 VAKQSTLWATTGRRTPIYSKKTSSNST 274
           +   ++  A+TG  TP+    TSS ST
Sbjct: 573 LVTDTSS-ASTGHATPLLVTDTSSAST 598


>EF158822-1|ABM45857.2|   89|Homo sapiens MHC class II antigen
           protein.
          Length = 89

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = +1

Query: 70  YELHSEKNYEEIRFLDIYEKTFFQYLQQGHFKAFDKEIDLHSSKAVNFVG----NYWQTN 237
           YE H     E +RFLD Y      +  Q  +  FD   D+   +AV  +G     YW + 
Sbjct: 8   YECHFFNGTERVRFLDRY------FYHQEEYVRFDS--DVGEYRAVTELGRPDAEYWNSQ 59

Query: 238 ADLFEE 255
            DL E+
Sbjct: 60  KDLLEQ 65


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,080,105
Number of Sequences: 237096
Number of extensions: 1567705
Number of successful extensions: 3536
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3531
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6466646650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)