Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31319
(608 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09000.1 68416.m01053 proline-rich family protein 30 1.4
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains... 29 2.4
At2g43760.1 68415.m05440 molybdopterin biosynthesis MoaE family ... 29 3.2
At5g13520.1 68418.m01561 peptidase M1 family protein similar to ... 28 4.2
At4g37190.1 68417.m05265 expressed protein 28 5.6
At4g11380.1 68417.m01835 beta-adaptin, putative strong similarit... 27 7.4
At1g72940.1 68414.m08436 disease resistance protein (TIR-NBS cla... 27 7.4
At1g72920.1 68414.m08434 disease resistance protein (TIR-NBS cla... 27 7.4
At1g69230.2 68414.m07930 expressed protein 27 7.4
At1g69230.1 68414.m07929 expressed protein 27 7.4
At5g64570.1 68418.m08115 glycosyl hydrolase family 3 protein 27 9.7
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +2
Query: 122 MRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNST 274
+RR SS+ SS+ TSRP+T T ST T R + S +S +T
Sbjct: 144 LRRPSSSGSSRSTSRPATPTRRSTTPTTSTSRPVTTRASNSRSSTPTSRAT 194
>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 954
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 134 SSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTS 262
+S S + ++P KK+ +AK++ A +RTP+ SK S
Sbjct: 833 ASGGKSGILNKPEIKKINQDLAKKTNAAANESQRTPVTSKPPS 875
>At2g43760.1 68415.m05440 molybdopterin biosynthesis MoaE family
protein contains Pfam profile: PF02391 molybdopterin
converting factor, subunit 2
Length = 198
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 124 EKTFFQYLQQGHFKAFDKEIDLHSSKAVNFVGNYWQTNADLFE-EDFLQFYQRSYEVNAR 300
EK + L++GH K ID S+ + + T D+FE + L+ +Y A
Sbjct: 5 EKNLIEILEEGHKVDVVKYIDYVSAPQAGAIATFSGTTRDMFEGKTVLELRYEAYVPMAT 64
Query: 301 RVLGA 315
R L +
Sbjct: 65 RCLSS 69
>At5g13520.1 68418.m01561 peptidase M1 family protein similar to
SP|P09960 Leukotriene A-4 hydrolase (EC 3.3.2.6) (LTA-4
hydrolase) {Homo sapiens}; contains Pfam profile
PF01433: Peptidase family M1
Length = 616
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 453 YLVLFKFDDVLTNPFIELVEGWVPG 379
Y+ FKF + TN F+E ++ +PG
Sbjct: 423 YIATFKFKSIDTNTFLEFLKANIPG 447
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -2
Query: 157 DLAGGIGRMSSHKCRGSEFLRSSSRCATRSHCFFGQMDSKRS 32
+L G +G MSS RG+ + SS + S +FG +D++RS
Sbjct: 71 NLKGALGTMSS---RGTLYNEGSSSRSDSSATWFGDVDTQRS 109
>At4g11380.1 68417.m01835 beta-adaptin, putative strong similarity
to SP|Q10567 Adapter-related protein complex 1 beta 1
subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
[Drosophila melanogaster] GI:434902; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 894
Score = 27.5 bits (58), Expect = 7.4
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +1
Query: 217 GNYWQTNADLFEEDFLQFYQRSYEVNARRVLGAAPKPFNQYTFIPSALDFYQTSARDPA 393
G Q +A L +D FY +E N++ VL FN+ TF +A Q PA
Sbjct: 676 GQGLQISAQLSRKDGQVFYSMLFENNSQSVLDGFMIQFNKNTFGLAAAGSLQIPPLHPA 734
>At1g72940.1 68414.m08436 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 371
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +1
Query: 157 HFKAFDKEIDLHSSKAVNFVG 219
H KA +K++DL+S+K++ VG
Sbjct: 191 HMKALNKKLDLNSNKSLRVVG 211
>At1g72920.1 68414.m08434 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 275
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +1
Query: 157 HFKAFDKEIDLHSSKAVNFVG 219
H KA +K++DL+S+K++ VG
Sbjct: 191 HMKALNKKLDLNSNKSLRVVG 211
>At1g69230.2 68414.m07930 expressed protein
Length = 110
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 107 ASSTFMRRHSSNTSSKVTSRPSTK 178
+++ +MR NT + +T RPSTK
Sbjct: 67 SANNYMRAEGQNTGNFITDRPSTK 90
>At1g69230.1 68414.m07929 expressed protein
Length = 110
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 107 ASSTFMRRHSSNTSSKVTSRPSTK 178
+++ +MR NT + +T RPSTK
Sbjct: 67 SANNYMRAEGQNTGNFITDRPSTK 90
>At5g64570.1 68418.m08115 glycosyl hydrolase family 3 protein
Length = 784
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -3
Query: 570 EVDGVEGIEVEMVKECAHFVDFDVGNFQTNEVKSFLCVWYLVLFKFDDVLTNPF 409
E DG + +++ C H+ +DV N++ E SF V + DD PF
Sbjct: 209 ETDGGDSNRLKVAACCKHYTAYDVDNWKGVERYSFNAV--VTQQDMDDTYQPPF 260
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,977,870
Number of Sequences: 28952
Number of extensions: 236584
Number of successful extensions: 771
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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