Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31315
         (356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    29   0.28 
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    26   1.5  
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar...    24   6.1  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    24   8.0  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    24   8.0  

>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 28.7 bits (61), Expect = 0.28
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 138 LFYISHFYYYNLRVSLPSNHVSHFNYIDFIFF 233
           L Y++  Y    ++SLP +H  ++  I ++FF
Sbjct: 75  LIYLADKYDTERKISLPRDHPEYYKVIQYLFF 106


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 8   VRFKKEKKTVVFINCHFFAFCVNNYRFRYFIQTY 109
           +RF K  +  ++I     A+C  NY +R FIQ Y
Sbjct: 3   IRFLKRLRAPLYIQN---AYCSKNYFYRSFIQYY 33


>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 295 SVSLENDYNILFDVTDAQSDPKNIKSI 215
           S+S+         + D QSD KN+KSI
Sbjct: 44  SLSVAKGQQHTLTIADVQSDMKNLKSI 70


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +2

Query: 29  KTVVFINCHFFAFCVNNYRFRYFIQTYF 112
           K V F N H F  CV  Y      Q YF
Sbjct: 439 KNVDFENQHIFTACVEIYLSYCITQLYF 466


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 51  VIFLHSV*IIIVFGTLYKRIL*SDG--FIQFLFYISHFYYYNLRVSLPSN 194
           ++F HS+ +++    +    + S G  FI F+   S +Y+++ +V+ P N
Sbjct: 334 LLFTHSLALLLSSLEMVLAFVGSTGSTFISFILPGSLYYFFSHKVASPGN 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,377,338
Number of Sequences: 5004
Number of extensions: 25017
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)