Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31315
         (356 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   3.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   3.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   3.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   4.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   4.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   5.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   7.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   7.6  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 183 LPSNHVSHFNYIDFI 227
           LP NH+ +  Y+D I
Sbjct: 361 LPENHLKNAKYLDVI 375


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 183 LPSNHVSHFNYIDFI 227
           LP NH+ +  Y+D I
Sbjct: 361 LPENHLKNAKYLDVI 375


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 183 LPSNHVSHFNYIDFI 227
           LP NH+ +  Y+D I
Sbjct: 361 LPENHLKNAKYLDVI 375


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 126 FIQF--LFYISHFYYYNLRVSLPSNHVSHFNYID 221
           FIQ   L+ +  ++++N  V   +NH   F  +D
Sbjct: 156 FIQLPPLYEMCPYFFFNSEVLQKANHALIFGKLD 189


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 126 FIQF--LFYISHFYYYNLRVSLPSNHVSHFNYID 221
           FIQ   L+ +  ++++N  V   +NH   F  +D
Sbjct: 156 FIQLPPLYEMCPYFFFNSEVLQKANHALIFGKLD 189


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 198 VSHFNYIDFIFFGSD*ASVTSKSIL*SFSRDTDH-ENDIK 314
           + HFNY+  IF  S  +    +++L  F   + + E+D++
Sbjct: 162 LKHFNYMKVIFIHS--SDTDGRALLGRFQTTSQNLEDDVE 199


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 308 IIFMISISRKRLQYTL 261
           I+F I++ RK L YT+
Sbjct: 226 IVFNITLRRKTLFYTV 241


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -2

Query: 136 NCINPSLYKIRLY 98
           NC++P+L K+ L+
Sbjct: 594 NCLDPNLPKLALF 606


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,452
Number of Sequences: 438
Number of extensions: 1703
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)