Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31315
         (356 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05560.1 68418.m00604 E3 ubiquitin ligase, putative E3, ubiqu...    26   6.4  
At5g01640.1 68418.m00080 prenylated rab acceptor (PRA1) family p...    26   6.4  
At3g25040.1 68416.m03129 ER lumen protein retaining receptor, pu...    26   6.4  
At1g65580.1 68414.m07439 endonuclease/exonuclease/phosphatase fa...    26   6.4  
At4g38870.1 68417.m05504 F-box family protein contains Pfam prof...    26   8.5  
At2g30550.1 68415.m03720 lipase class 3 family protein similar t...    26   8.5  

>At5g05560.1 68418.m00604 E3 ubiquitin ligase, putative E3, ubiquitin
            ligase; contains similarity to Apc1/Tsg24 protein, the
            largest subunit of human anaphase-promoting complex
            (APC/C) GI:11967711 from [Homo sapiens]
          Length = 1678

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 171  LRVSLPSNHVSHFNYIDFIFFGSD 242
            LR+ LP+ H+S    ID +FF S+
Sbjct: 1655 LRLLLPNTHISVIGEIDRVFFPSN 1678


>At5g01640.1 68418.m00080 prenylated rab acceptor (PRA1) family
           protein weak similarity to prenylated Rab acceptor 1
           (PRA1) [Homo sapiens] GI:4877285; contains Pfam profile
           PF03208: Prenylated rab acceptor (PRA1)
          Length = 223

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +1

Query: 25  KKNCSFYKLSFFCILCK*LSFSVL 96
           +KN S++++++ CI+   L FS+L
Sbjct: 80  RKNSSYFRVNYVCIVALILGFSLL 103


>At3g25040.1 68416.m03129 ER lumen protein retaining receptor,
           putative / HDEL receptor, putative similar to SP|P35402
           ER lumen protein retaining receptor (HDEL receptor)
           {Arabidopsis thaliana}; contains Pfam profile PF00810:
           ER lumen protein retaining receptor
          Length = 215

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 123 GFIQFLFYISHFYYYNL 173
           GF+Q L Y   FYYY L
Sbjct: 187 GFVQTLLYADFFYYYFL 203


>At1g65580.1 68414.m07439 endonuclease/exonuclease/phosphatase
           family protein similar to inositol polyphosphate
           5-phosphatase II isoform (GI:15418718) [Mus musculus];
           contains 6 (5 weak) Pfam: Pf00400 WD domain, G-beta
           repeats and Pfam PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 1101

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 5   GVRFKKEKKTVVFINCHFFA 64
           GVR +   + + F+NCHF A
Sbjct: 667 GVRLRMYDRVLCFVNCHFAA 686


>At4g38870.1 68417.m05504 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 426

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -2

Query: 130 INPSLYKIRLYKVPKTIIIYTECKKMTV 47
           I+PS++ +  Y  P +++IY  C + ++
Sbjct: 154 ISPSVHGLICYGPPSSLVIYNPCTRRSI 181


>At2g30550.1 68415.m03720 lipase class 3 family protein similar to
           DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
           GI:16215706; contains Pfam profile PF01764: Lipase
          Length = 464

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 120 DGFIQFLFYISHFYY 164
           DG++ FLFY S F Y
Sbjct: 447 DGYVSFLFYFSLFIY 461


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,648,591
Number of Sequences: 28952
Number of extensions: 110964
Number of successful extensions: 183
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)