Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31314
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   148   7e-37
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    32   0.072
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    26   3.6  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   4.7  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   6.2  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   8.3  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   8.3  
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    25   8.3  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  148 bits (358), Expect = 7e-37
 Identities = 74/142 (52%), Positives = 92/142 (64%), Gaps = 1/142 (0%)
 Frame = +3

Query: 159 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 338
           NPLF  RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLD
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 339 KTTAKGLFKILEKYRPET-XXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 515
           K TA  +FK+L KYRPET                          +P  ++ G N V  L+
Sbjct: 84  KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALI 143

Query: 516 EKKKAQLVVIAHDVDPIELVLF 581
           E KKA+LV+IA DVDPIELV+F
Sbjct: 144 EAKKAKLVLIASDVDPIELVVF 165


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 31.9 bits (69), Expect = 0.072
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 480 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVL 578
           +R G N  TK + +  ++ +V+A D +PIE++L
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILL 64


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 476 YHPIRHKHSHQAGREEESAACGHR 547
           + P  HKH++    +EE  +C HR
Sbjct: 149 FQPNGHKHTYAEMTDEERNSCSHR 172


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 273 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 374
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 257 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 346
           PHP      SA S ++P   P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +3

Query: 345 TAKGLFKILEKYR 383
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 309  EGALSDDAEVQPSGAGCGYTWAILQIWTSHELAECPDQWQSSLASSRREDSR 154
            +GAL   A V   G   G+ +++    T H L +     Q +L+SS+R  +R
Sbjct: 1538 KGALGIGARVGGLGQMPGWWYSVESSATPHLLKQFEQACQQALSSSQRTRAR 1589


>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 588 WQEKGPAQWDQHHE 547
           W E G   WDQHHE
Sbjct: 186 WNESG--SWDQHHE 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,108,527
Number of Sequences: 5004
Number of extensions: 38002
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)