Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31314
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             165   3e-41
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        67   1e-11
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        32   0.30 
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          30   1.2  
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  165 bits (400), Expect = 3e-41
 Identities = 78/141 (55%), Positives = 96/141 (68%)
 Frame = +3

Query: 159 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 338
           NPL EKRP+NF IG  IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD
Sbjct: 29  NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALD 88

Query: 339 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 518
           + +   LFK+L KYRPET                         +P  ++ G N +T LVE
Sbjct: 89  RQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVE 148

Query: 519 KKKAQLVVIAHDVDPIELVLF 581
            KKAQLVVIAHDVDPIE+V++
Sbjct: 149 NKKAQLVVIAHDVDPIEIVVW 169


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 34/75 (45%), Positives = 42/75 (56%)
 Frame = +3

Query: 357 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAQL 536
           LFK+L KYRPET                         +P  ++ G N +T LVE KKAQL
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63

Query: 537 VVIAHDVDPIELVLF 581
           VVIAHDVDPIE+V++
Sbjct: 64  VVIAHDVDPIEIVVW 78


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 480 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVL 578
           +R G N  TK + +  A+ +V+A D +P+E++L
Sbjct: 94  LRKGANEATKCLNRGIAEFIVMAADTEPLEILL 126


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 468 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELV 575
           +  T+R G   V K + K +   V++A DV PI+++
Sbjct: 95  KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVI 130


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 281 TSASSESAPSDQPIYPDTG 337
           T+ASSE+APS  P  PD G
Sbjct: 43  TAASSEAAPSSAPSMPDYG 61


>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 228 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 377
           SR  RW  Y R+   KA+LQR  ++   I Q T  + K        +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,071,385
Number of Sequences: 59808
Number of extensions: 296654
Number of successful extensions: 864
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)