Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31314
         (591 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...   153   1e-37
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)           152   1e-37
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45...    30   1.0  
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45...    30   1.0  
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45...    30   1.3  
At5g07010.1 68418.m00794 sulfotransferase family protein similar...    28   4.1  
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi...    28   4.1  
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi...    28   4.1  
At5g43830.1 68418.m05359 expressed protein similar to auxin down...    28   5.4  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score =  153 bits (370), Expect = 1e-37
 Identities = 75/141 (53%), Positives = 94/141 (66%)
 Frame = +3

Query: 159 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 338
           NPLFE+RPK F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD
Sbjct: 20  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 79

Query: 339 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 518
           K  A  LFKIL KYRPE                          +P  ++ G N VT L+E
Sbjct: 80  KNLATSLFKILLKYRPE-DKAAKKERLLNKAQAEAEGKPAESKKPIVVKYGLNHVTYLIE 138

Query: 519 KKKAQLVVIAHDVDPIELVLF 581
           + KAQLVVIAHDVDPIELV++
Sbjct: 139 QNKAQLVVIAHDVDPIELVVW 159


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score =  152 bits (369), Expect = 1e-37
 Identities = 74/141 (52%), Positives = 94/141 (66%)
 Frame = +3

Query: 159 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 338
           NPLFE+RPK F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD
Sbjct: 21  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 80

Query: 339 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 518
           K  A  LFK+L KYRPE                          +P  ++ G N VT L+E
Sbjct: 81  KNLATSLFKVLLKYRPE-DKAAKKERLVKKAQAEAEGKPSESKKPIVVKYGLNHVTYLIE 139

Query: 519 KKKAQLVVIAHDVDPIELVLF 581
           + KAQLVVIAHDVDPIELV++
Sbjct: 140 QNKAQLVVIAHDVDPIELVVW 160


>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +3

Query: 480 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVL 578
           ++ G N  TK + +  ++ VV+A D +P+E++L
Sbjct: 35  LKKGANEATKTLNRGISEFVVMAADAEPLEILL 67


>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +3

Query: 480 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVL 578
           ++ G N  TK + +  ++ VV+A D +P+E++L
Sbjct: 35  LKKGANEATKTLNRGISEFVVMAADAEPLEILL 67


>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +3

Query: 480 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVL 578
           ++ G N  TK + +  ++ +V+A D +P+E++L
Sbjct: 35  LKKGANEATKTLNRGISEFIVMAADTEPLEILL 67


>At5g07010.1 68418.m00794 sulfotransferase family protein similar to
           steroid sulfotransferase 3 [Brassica napus] GI:3420008,
           steroid sulfotransferase 1 [Brassica napus] GI:3420004;
           contains Pfam profile PF00685: Sulfotransferase domain
          Length = 359

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 524 LLLDQLGDCVCAGSDGIGPLWWRLI 450
           +LLDQ  D  C G  G GP W  ++
Sbjct: 214 VLLDQAFDLYCRGVIGFGPFWEHML 238


>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
           to 40S ribosomal protein S12 GI:4263712 from
           [Arabidopsis thaliana]
          Length = 144

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 489 GTNTVTKLVEKKKAQLVVIAHDVDPIELV 575
           G +   KL+EK+ AQLVV+A D +  + V
Sbjct: 47  GLHECAKLIEKRVAQLVVLAEDCNQPDYV 75


>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
           to 40S ribosomal protein S12 GI:4263712 from
           [Arabidopsis thaliana]
          Length = 144

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 489 GTNTVTKLVEKKKAQLVVIAHDVDPIELV 575
           G +   KL+EK+ AQLVV+A D +  + V
Sbjct: 47  GLHECAKLIEKRVAQLVVLAEDCNQPDYV 75


>At5g43830.1 68418.m05359 expressed protein similar to auxin
           down-regulated protein ARG10 [Vigna radiata] GI:2970051,
           wali7 (aluminum-induced protein) [Triticum aestivum]
           GI:451193
          Length = 251

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -2

Query: 554 IMSDDH-KLRFLLLDQLGDCV--CAGSDGIGPLWWRLIFLGNLSFSSFPQPLFXGC 396
           ++ D H K  F+L D +   V   A +DG  P +W     G+L FS   + +  GC
Sbjct: 124 VVRDFHGKFAFILFDSVKKTVFAAADADGSVPFFWGTDAEGHLVFSDNTEMVKKGC 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,412,158
Number of Sequences: 28952
Number of extensions: 215571
Number of successful extensions: 630
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)