Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31313
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    27   2.8  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    27   2.8  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    26   4.9  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    25   8.6  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.6  

>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 540 LDYSDNVYFYGPDKKPKVVTEN 475
           L Y+D + +YGPD K  V++ N
Sbjct: 325 LPYNDYLQYYGPDYKLNVLSNN 346


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 444 NPAQVRLIKPPFVIENGVVFIVDNDIYTIFANGTSEKTD 328
           +P+QV  +     + NG V+ +D  +Y +  N T+ + D
Sbjct: 452 HPSQVGFVASSNTLSNGRVYYLDTRMYKVCLNFTTTQKD 490


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 337 LTCTVRKYSINVVIYNKNNTVFYDK 411
           ++ TV K+ I   +YN NN VF DK
Sbjct: 373 ISLTVLKHEIRTKLYNSNN-VFLDK 396


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 341 LVPFANIV*MSLSTIKTTPFSMT 409
           L PF +++  +LST+K TP S++
Sbjct: 148 LSPFTSLLPSTLSTLKDTPLSVS 170


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 194 HFWKRRLKIYSRSRPDHAADSE 129
           +F     +IY RS P H ADSE
Sbjct: 560 NFSTASFEIYERSIPTHGADSE 581


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,385,078
Number of Sequences: 5004
Number of extensions: 49548
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)