Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31313
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_22307| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_52550| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_264| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   5.2  
SB_35291| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_3898| Best HMM Match : CITED (HMM E-Value=1.5)                      28   6.9  
SB_43370| Best HMM Match : RhoGAP (HMM E-Value=1.6e-18)                27   9.1  
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  27   9.1  

>SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 399 NGVVFIVDNDIYTIFANGTSEKTD 328
           N VVF+VDN +Y  + N T   TD
Sbjct: 95  NEVVFVVDNTVYQRYHNNTKTVTD 118


>SB_22307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 713

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 502 QKAESCDRKWGAGNRWPSRKPSSGEANQTTVCHRKRC 392
           Q A  CDR    GN+W      +G A  T+    KRC
Sbjct: 44  QNALRCDRNEFPGNQWYRFTGQAGNAMPTSCVPEKRC 80


>SB_52550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 502 QKAESCDRKWGAGNRWPSRKPSSGEANQTTVCHRKRC 392
           Q A  CDR    GN+W      +G A  T+    KRC
Sbjct: 176 QNALRCDRNEFPGNQWYRFTGQAGNAMPTSCVPEKRC 212


>SB_264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 502 QKAESCDRKWGAGNRWPSRKPSSGEANQTTVCHRKRC 392
           Q A  CD+    GN+W      +G+A  T+    KRC
Sbjct: 20  QNALRCDKNEFPGNQWYRFTGQAGDAMPTSCVPEKRC 56


>SB_35291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 502 QKAESCDRKWGAGNRWPSRKPSSGEANQTTVCHRKRC 392
           Q A  CD+    GN+W      +G+A  T+    KRC
Sbjct: 20  QNALRCDKNEFPGNQWYRFTGQAGDAMPTSCVPEKRC 56


>SB_3898| Best HMM Match : CITED (HMM E-Value=1.5)
          Length = 1166

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +2

Query: 368 MSLSTIKTTPFSMTNGGLISLT*AGFSG-RPTISCTPFSVTTF--GFLSGP 511
           +SLS + TTP S     + S   A  S   P +S  PFS  TF   F SGP
Sbjct: 617 VSLSVV-TTPCSSWTRSVFSWMTASISAIDPIVSLKPFSFATFQRSFASGP 666


>SB_43370| Best HMM Match : RhoGAP (HMM E-Value=1.6e-18)
          Length = 865

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -2

Query: 215 SYLMN*KHFWKRRLKIYSRSRPDHAADSEPEHL 117
           SY +  K F KRR    S   P +AA SEPE L
Sbjct: 350 SYRLRRKIFGKRRGVFSSEKSPFYAAKSEPELL 382


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
 Frame = -1

Query: 564  AKDAQQIMLDYSDNVYFYGPDKKPKVVTENGV------QEIVGLPENPAQVRLIKPPFVI 403
            A+D    +LD+ DN   +  D +P +++ N        Q   GL       RL +   + 
Sbjct: 1379 AQDVADRVLDFDDNFDLFSLDFRPFLLSANDFDRVSAGQSTSGLQGAKLMGRLYESTTLT 1438

Query: 402  ENGVVFIVDNDIYTIFANGT-SEKTDFKLDAKP-TASAVEATLIQYYAYNKNI 250
            E    + + +D+ TI  N T + + + +L  K  T+  V  TL     +NKNI
Sbjct: 1439 EEASPYEITSDV-TILPNVTLTIEPNVELKFKAGTSLLVLGTLNAKGTFNKNI 1490


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,201,728
Number of Sequences: 59808
Number of extensions: 343370
Number of successful extensions: 1145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)