Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31313
         (612 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30810.1 68415.m03757 gibberellin-regulated family protein si...    30   1.1  
At5g42950.1 68418.m05236 GYF domain-containing protein contains ...    29   2.4  
At5g67470.1 68418.m08507 formin homology 2 domain-containing pro...    28   4.2  
At3g22710.1 68416.m02865 F-box family protein contains F-box dom...    27   9.8  

>At2g30810.1 68415.m03757 gibberellin-regulated family protein
           similar to GASA5 [Arabidopsis thaliana] GI:1289320;
           contains Pfam profile PF02704: Gibberellin regulated
           protein
          Length = 106

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 508 SRQKAESCDRKWGAGNRWPSRKPSSGEANQTTVCHRKRCCFYC 380
           S+ +A +  +  G G+  P   P + E   +   HRK C F+C
Sbjct: 27  SQAQAPAIHKNGGEGSLKPEECPKACEYRCSATSHRKPCLFFC 69


>At5g42950.1 68418.m05236 GYF domain-containing protein contains Pfam
            profile: PF02213 GYF domain
          Length = 1714

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = -1

Query: 546  IMLDYSDNVYFYGPDKKPKVVTENGVQEIVGLPENPAQVRLIKPPFVIENGVVFIVDNDI 367
            +  DY +++Y   P   P     + V+E V  P N +    +  P ++E+ ++     D+
Sbjct: 1013 VSADYVNSLYSEKPVLSPGYHATHNVEEPVSYPNNESSTATMTAPEIVESKLLEEQSKDM 1072

Query: 366  Y 364
            Y
Sbjct: 1073 Y 1073


>At5g67470.1 68418.m08507 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 899

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 219 GELFDELKTFLEEKAEDIQSI 157
           G  FD +KTFL+E  E+I+ I
Sbjct: 778 GRFFDSMKTFLKEAEEEIRKI 798


>At3g22710.1 68416.m02865 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 326

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +2

Query: 41  IFNFIPLLIRIVNLHILY 94
           IFN++P L++I N H+L+
Sbjct: 307 IFNYVPRLVQIYNGHLLF 324


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,126,709
Number of Sequences: 28952
Number of extensions: 245630
Number of successful extensions: 606
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)