Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31310
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    23   2.0  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   2.7  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    26   2.7  
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi...    25   6.1  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.1  

>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 23.4 bits (48), Expect(2) = 2.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 359 LKPLTVDRVIDKTSNLY*HH*PTKLLSRRSE 267
           ++PLT+   I K+ NL+  H   K ++  SE
Sbjct: 42  IRPLTLISKITKSQNLFERHGKNKKIAVNSE 72



 Score = 21.4 bits (43), Expect(2) = 2.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 185 NKKYPIKKMQNLLLVGTMRNYV 120
           NKK  +     ++ V T +NYV
Sbjct: 64  NKKIAVNSEYGIIAVATEKNYV 85


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 425 EYKPNYLYCIIMYIARHIPHTILKPLTVDRVIDKTSNL 312
           E  P YLY      +   PH   +PL   + IDK SN+
Sbjct: 79  EIAPKYLYPSSPSKSTKKPHNETEPLLSPQFIDKPSNI 116


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 121 SLVYIYFFFYVSPYVELLRNRF*CFY 44
           SL+++Y F YVS  +  +R  + CFY
Sbjct: 229 SLLFMYQFPYVSVPIYSIRQMYTCFY 254


>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
           Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 273

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 336 CDRQNIKPLLTPLTDQTLKSPF 271
           C R N+ P+LT L     + PF
Sbjct: 82  CSRNNVSPVLTDLPPYAAEHPF 103


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 333 DRQNIKPLLTPLTDQTLKSPFRNSPMLILPVN 238
           +  ++ P  TP+T   L+ P   +P ++ P N
Sbjct: 295 ENSDLTPARTPVTPAPLEKPVNLAPEVVEPTN 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,963,752
Number of Sequences: 5004
Number of extensions: 38472
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)