Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31310
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0187 + 7611922-7614099,7614692-7614795,7614828-7614996           29   2.6  
03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267...    28   3.5  
04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888     27   8.1  

>02_02_0187 + 7611922-7614099,7614692-7614795,7614828-7614996
          Length = 816

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 256 HRAVSERRLKSLVGQWC 306
           HR V  R L+SL+ QWC
Sbjct: 348 HRLVPNRALRSLISQWC 364


>03_02_0672 -
           10325935-10326150,10326308-10326400,10326568-10326708,
           10326828-10326893,10327099-10327359
          Length = 258

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 195 LLRQ*KISNKKNAKFTISRYYEELCPW 115
           LL    +  KK  K  ++ YYE LCP+
Sbjct: 18  LLAAGAVEGKKGGKVDVALYYESLCPY 44


>04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888
          Length = 748

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = -3

Query: 174 SNKKNAKFTISRYYEELC---PWFI--YIFFFMSVHT*NCYEIDFDAFIKIHSL 28
           S+  + K  + ++ EE+C    W +  YI+   ++ T +C   DFD  + + SL
Sbjct: 463 SDVLDGKANLRKFIEEVCLTLEWTVNQYIYCVDALETVDCITNDFDGNVSLRSL 516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,841,937
Number of Sequences: 37544
Number of extensions: 186773
Number of successful extensions: 291
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)