Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31310
         (488 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16990.1 68417.m02561 disease resistance protein (TIR-NBS cla...    30   0.96 
At1g07080.1 68414.m00754 gamma interferon responsive lysosomal t...    29   1.3  
At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger) fa...    28   3.9  
At5g51350.1 68418.m06367 leucine-rich repeat transmembrane prote...    27   6.8  

>At4g16990.1 68417.m02561 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 520

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 313 RFDVLSITRSTVKGFKIVCGMCLAMYIIIQYR*LGLY 423
           ++++  I  ST  G K VC + +  Y++IQYR  G Y
Sbjct: 484 KYNICGIDSSTDGGGKKVCYVGIYPYVLIQYRIAGRY 520


>At1g07080.1 68414.m00754 gamma interferon responsive lysosomal
           thiol reductase family protein / GILT family protein
           similar to SP|P13284 Gamma-interferon inducible
           lysosomal thiol reductase precursor {Homo sapiens};
           contains Pfam profile PF03227: Gamma interferon
           inducible lysosomal thiol reductase (GILT)
          Length = 265

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 156 KFTISRYYEELCPWFIYIFFFMSVHT*NCYEIDFDAFIKIHSLFPYDQTLL 4
           K ++  YYE LCP   Y   F+  H    +E D  + + +H L P+  T L
Sbjct: 38  KVSVGLYYESLCP---YCSSFIVNHLAKLFEDDLISIVDLH-LSPWGNTKL 84


>At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 506

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 254 SIGLFRNGDLRVWSVSGVNRGLMFCRSHGQQ 346
           S+  + NG   +W  SG NR L     HG++
Sbjct: 399 SVSPYSNGSGNIWQSSGTNRNLGRWSKHGER 429


>At5g51350.1 68418.m06367 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 895

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 301 TDRPNS*VAVPKQPDAYSSGQLI 233
           TD+ N  + V KQ D Y+ GQLI
Sbjct: 792 TDQMNDVIRVEKQKDVYNFGQLI 814


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,515,113
Number of Sequences: 28952
Number of extensions: 174380
Number of successful extensions: 320
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)