Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31309
(509 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.24
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077) 31 0.73
SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73
SB_1560| Best HMM Match : Glyco_hydro_67C (HMM E-Value=8.4) 30 1.3
SB_2867| Best HMM Match : Aerolysin (HMM E-Value=5.3e-06) 29 1.7
SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18) 29 2.2
SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21) 29 2.2
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06) 29 2.2
SB_1489| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.77) 29 2.9
SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05) 28 3.9
SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23) 28 3.9
SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024) 28 3.9
SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3) 27 6.8
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 27 9.0
>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 32.3 bits (70), Expect = 0.24
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHP 317
HP+ A W HP+ A W+HP
Sbjct: 218 HPNKTQANWYHPNKTQANWNHP 239
Score = 31.5 bits (68), Expect = 0.42
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHPA 320
HP A W+HP A W+HP+
Sbjct: 178 HPTKTQANWNHPSKTRANWNHPS 200
Score = 31.1 bits (67), Expect = 0.55
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHPA 320
HP A W+HP A W+HP+
Sbjct: 78 HPTKTHANWNHPSKTRANWNHPS 100
Score = 31.1 bits (67), Expect = 0.55
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHP 317
HP+ A W+HP A W HP
Sbjct: 228 HPNKTQANWNHPTKTQANWYHP 249
Score = 30.3 bits (65), Expect = 0.96
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHP 317
HP A W HP A W+HP
Sbjct: 528 HPTKTQANWCHPTKTQANWNHP 549
Score = 29.9 bits (64), Expect = 1.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHPA 320
HP A W HP + W+HP+
Sbjct: 268 HPSKTQANWYHPSKTQSNWNHPS 290
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHPA 320
HP A W HP A W HP+
Sbjct: 258 HPTKTQANWYHPSKTQANWYHPS 280
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHP 317
HP A W HP A W HP
Sbjct: 408 HPSKTHANWCHPTKTQANWCHP 429
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHP 317
HP A W HP A W HP
Sbjct: 418 HPTKTQANWCHPTKTQANWCHP 439
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHP 317
HP A W HP A W HP
Sbjct: 428 HPTKTQANWCHPTKTQANWCHP 449
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHPA 320
HP A W HP A W HP+
Sbjct: 468 HPSKTQANWYHPTKTQANWYHPS 490
Score = 29.1 bits (62), Expect = 2.2
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +3
Query: 249 SHPHTLPARWSHPHTLPARWSHP 317
+HP A W HP A W HP
Sbjct: 237 NHPTKTQANWYHPTKTQANWYHP 259
Score = 29.1 bits (62), Expect = 2.2
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHPA 320
HP A W HP A W HP+
Sbjct: 248 HPTKTQANWYHPTKTQANWYHPS 270
Score = 29.1 bits (62), Expect = 2.2
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHP 317
HP T A W +P A W HP
Sbjct: 308 HPTTTHANWCYPTKTQANWCHP 329
Score = 29.1 bits (62), Expect = 2.2
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHP 317
HP A W HP A W HP
Sbjct: 458 HPTKTQANWYHPSKTQANWYHP 479
Score = 29.1 bits (62), Expect = 2.2
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHP 317
HP A W HP A W HP
Sbjct: 478 HPTKTQANWYHPSKTKANWYHP 499
Score = 29.1 bits (62), Expect = 2.2
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHP 317
HP A W HP A W HP
Sbjct: 518 HPTKTQANWYHPTKTQANWCHP 539
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHP 317
HP A W HP T A W +P
Sbjct: 298 HPTKTHANWCHPTTTHANWCYP 319
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHP 317
HP A W HP A W HP
Sbjct: 508 HPTKTQANWYHPTKTQANWYHP 529
Score = 28.3 bits (60), Expect = 3.9
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +3
Query: 249 SHPHTLPARWSHPHTLPARWSHP 317
+HP + + W HP+ A W +P
Sbjct: 47 NHPIKIQSNWCHPNKTQANWCYP 69
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHP 317
HP PA HP+ A W HP
Sbjct: 208 HPTKTPAYLCHPNKTQANWYHP 229
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHP 317
HP A W HP W HP
Sbjct: 338 HPTKTQANWYHPSKTQVNWYHP 359
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHP 317
HP A W HP + W HP
Sbjct: 488 HPSKTKANWYHPIKTQSNWYHP 509
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHP 317
HP + W HP A W HP
Sbjct: 498 HPIKTQSNWYHPTKTQANWYHP 519
>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
Length = 677
Score = 30.7 bits (66), Expect = 0.73
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 249 SHPHTLPARWSHPHTLPARWSHP 317
+HP A W HP+ A W HP
Sbjct: 282 NHPIKTQANWCHPNKTQANWCHP 304
Score = 30.3 bits (65), Expect = 0.96
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHP 317
HP A W+HP A W HP
Sbjct: 383 HPTKTQANWNHPSKTQANWYHP 404
Score = 30.3 bits (65), Expect = 0.96
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHPA 320
HP A W+HP A W+HP+
Sbjct: 423 HPTKTHANWNHPSKTWANWNHPS 445
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSH 314
HP A W+HP A W+H
Sbjct: 313 HPTKTQANWNHPSKTQANWNH 333
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3
Query: 249 SHPHTLPARWSHPHTLPARWSHPA 320
+HP A W HP + W HP+
Sbjct: 392 NHPSKTQANWYHPPKTQSNWYHPS 415
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHP 317
HP A W HP A W HP
Sbjct: 473 HPAKTQANWYHPTKTQANWYHP 494
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHP 317
HP A W HP A W HP
Sbjct: 649 HPTKTQANWYHPTKTQANWYHP 670
Score = 28.3 bits (60), Expect = 3.9
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHPA 320
HP A W HP + W HP+
Sbjct: 503 HPTKTQANWYHPSKTQSNWYHPS 525
Score = 27.9 bits (59), Expect = 5.1
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHP 317
HP+ A W H + + W HP
Sbjct: 193 HPYKTQANWCHTSKIQSNWYHP 214
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Frame = +3
Query: 270 ARWSHPHTLPARWSHPAAPAXXXXXXXXXXXXXXLPKATTT--CTRPRTRFSLKKPARS 440
A W HP+ A W HP P T T C T+ +L P ++
Sbjct: 13 ANWCHPYKTQANWCHPTKTQANLNHPSKIQSNWYHPNKTQTNWCYPTNTQANLCHPTKT 71
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHPA 320
HP W HP A W HP+
Sbjct: 493 HPTKTQCNWYHPTKTQANWYHPS 515
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Frame = +3
Query: 270 ARWSHPHTLPARWSHPAAPAXXXXXXXXXXXXXXLPKATTT--CTRPRTRFSLKKPARS 440
A W HP+ A W HP P T T C T+ +L P ++
Sbjct: 545 ANWCHPYKTQANWCHPTKTQANLNHPSKIQSNWYHPNKTQTNWCYPTNTQANLCHPTKT 603
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHPA 320
HP+ A W HP A +HP+
Sbjct: 17 HPYKTQANWCHPTKTQANLNHPS 39
Score = 27.1 bits (57), Expect = 9.0
Identities = 7/23 (30%), Positives = 12/23 (52%)
Frame = +3
Query: 249 SHPHTLPARWSHPHTLPARWSHP 317
+HP + + W HP+ W +P
Sbjct: 36 NHPSKIQSNWYHPNKTQTNWCYP 58
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHP 317
HP A W HP W HP
Sbjct: 483 HPTKTQANWYHPTKTQCNWYHP 504
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHPA 320
HP+ A W HP A +HP+
Sbjct: 549 HPYKTQANWCHPTKTQANLNHPS 571
Score = 27.1 bits (57), Expect = 9.0
Identities = 7/23 (30%), Positives = 12/23 (52%)
Frame = +3
Query: 249 SHPHTLPARWSHPHTLPARWSHP 317
+HP + + W HP+ W +P
Sbjct: 568 NHPSKIQSNWYHPNKTQTNWCYP 590
>SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 30.7 bits (66), Expect = 0.73
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 250 HTHIRCQQGGHTHIRCQQGGPTQRRRLRLQIRYHS 354
H+HIR HTHIR TQ +RL + HS
Sbjct: 140 HSHIRLPSTQHTHIRLHS---TQHTHIRLHLTQHS 171
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 250 HTHIRCQQGGHTHIRCQQGGPTQRRRLRLQIRYHS 354
HTHIR HTHIR TQ +RL HS
Sbjct: 210 HTHIRLPSTQHTHIRLPS---TQHSHIRLPSTQHS 241
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Frame = +1
Query: 190 LQGIQHCSPARREAYHSR-----ASHTHIRCQQGGHTHIRCQQGGPTQRRRLRLQIRYHS 354
L IQH HS HTHIR HTHIR TQ +RL HS
Sbjct: 175 LPSIQHSRIRLPSIQHSHIRLPSTQHTHIRLPLTQHTHIRLPS---TQHTHIRLPSTQHS 231
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 250 HTHIRCQQGGHTHIRCQQGGPTQRRRLRLQIRYHS 354
HTHIR HTHIR TQ +RL HS
Sbjct: 150 HTHIRLHSTQHTHIRLHL---TQHSHIRLPSIQHS 181
>SB_1560| Best HMM Match : Glyco_hydro_67C (HMM E-Value=8.4)
Length = 296
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/70 (27%), Positives = 26/70 (37%)
Frame = +3
Query: 258 HTLPARWSHPHTLPARWSHPAAPAXXXXXXXXXXXXXXLPKATTTCTRPRTRFSLKKPAR 437
HT + W H L S+ A +TTT T T++ + K
Sbjct: 46 HTTTSSWKASHELGVEISYTPPGATGGFGGKVSYKFNYESSSTTTDTNTNTQWFIDKVMS 105
Query: 438 SRTLAPKTKA 467
+TLAP T A
Sbjct: 106 EKTLAPYTAA 115
>SB_2867| Best HMM Match : Aerolysin (HMM E-Value=5.3e-06)
Length = 472
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/70 (27%), Positives = 26/70 (37%)
Frame = +3
Query: 258 HTLPARWSHPHTLPARWSHPAAPAXXXXXXXXXXXXXXLPKATTTCTRPRTRFSLKKPAR 437
HT + W H L S+ A +TTT T T++ + K
Sbjct: 222 HTATSSWKVAHELGIEVSYTPPGATGGVGGKVSYKFNYESSSTTTDTNTNTQWFIDKVMS 281
Query: 438 SRTLAPKTKA 467
+TLAP T A
Sbjct: 282 EKTLAPHTAA 291
>SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)
Length = 516
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +2
Query: 269 SKVVTPTYVASKVVPPSGAGYDYKYGIIRYDNDVAPEGYHYLYETENKILAEEAGKVENV 448
+ ++ P V +K P G DY Y + D +A YH L E +E++
Sbjct: 183 ANIIAPISVVNKF--PPGTVVDYAYNVFYQDRKIAHTPYHALTVGERDCYNARRDMLEHL 240
Query: 449 G 451
G
Sbjct: 241 G 241
>SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)
Length = 759
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = +1
Query: 253 THIRCQQGGHT---HIRCQQGGPTQRRRLR 333
T IRC+ GG T IRC+ GG T R+R
Sbjct: 601 TSIRCRSGGGTCVTRIRCRSGGGTCVTRIR 630
>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
Length = 425
Score = 29.1 bits (62), Expect = 2.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 295 NVCGCDHLAGNVCGCDWHGNGRL 227
N GC+ GN GC++ G+ R+
Sbjct: 382 NTMGCEFQGGNTMGCEFQGDSRI 404
>SB_1489| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.77)
Length = 872
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -2
Query: 319 AGWDHLAGNVCGCDHLAGNVCGCDWHGNGRLHDGQ---GNNAG 200
AG ++ GN C++ GN G ++ G G DG GN AG
Sbjct: 663 AGGNYAGGNYADCNYTGGNYAGGNYAG-GNYADGNYTGGNYAG 704
>SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 117 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 206
PVL +P S PRR S +LTR PA
Sbjct: 111 PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 140
>SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -2
Query: 304 LAGNVCGCDHLAGNVCGCDWHGNGRLHDGQGNNAGSLVSITKV 176
L GN CG L GN CG +GN GN +G+ + V
Sbjct: 238 LYGNKCGTS-LYGNKCGTSLYGNKSGTSLYGNKSGNPPDVVAV 279
>SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)
Length = 304
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 117 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 206
PVL +P S PRR S +LTR PA
Sbjct: 86 PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 115
>SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)
Length = 877
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = -2
Query: 289 CG-CD---HLAGNVCGCDWHGNGRL-HDGQGN 209
CG CD AG V CDW G+G L D +GN
Sbjct: 667 CGPCDVAVDSAGRVIACDWSGDGVLVFDSRGN 698
>SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)
Length = 180
Score = 28.3 bits (60), Expect = 3.9
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +3
Query: 249 SHPHTLPARWSHPHTLPARWSHP 317
+HP + + W HP+ A W +P
Sbjct: 127 NHPIKIQSNWCHPNKTQANWCYP 149
Score = 27.9 bits (59), Expect = 5.1
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSHP 317
HP+ A W H + + W HP
Sbjct: 38 HPYKTQANWCHTSKIQSNWYHP 59
Score = 27.9 bits (59), Expect = 5.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 252 HPHTLPARWSHPHTLPARWSH 314
HP A W+HP A W+H
Sbjct: 158 HPTKTHANWNHPSKTRANWNH 178
>SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3)
Length = 509
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 316 GWDHLAGNVCGCDHLAGNVCGCDWHGNGRLHDGQG 212
G D G+ CD G+ GC GNG + D +G
Sbjct: 398 GCDDDGGDDSSCDDDGGDDSGCYDDGNGSVFDDEG 432
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/49 (28%), Positives = 20/49 (40%)
Frame = +1
Query: 205 HCSPARREAYHSRASHTHIRCQQGGHTHIRCQQGGPTQRRRLRLQIRYH 351
HC R +H + H H C + + H + RLRL I +H
Sbjct: 250 HCHRPRLSNHHRPSRHLHCHCPRLSNHH---RLSRHLHSNRLRLSIHHH 295
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,846,487
Number of Sequences: 59808
Number of extensions: 246490
Number of successful extensions: 864
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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