Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31309
         (509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z48783-2|CAC42295.1|  805|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z48783-1|CAA88701.1|  780|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF233652-1|AAF63475.1|  780|Caenorhabditis elegans RFX-type tran...    28   4.5  
AF226156-1|AAF61564.1|  805|Caenorhabditis elegans RFX-like tran...    28   4.5  
AF026212-4|AAF99973.2|  386|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = +1

Query: 211 SPARREAYHSRASHTHIRCQQGGHTHIRCQQGGPTQRRRLRLQ 339
           SP RR+ +HSR+S  +I      H+ +R ++   +QR++L+ Q
Sbjct: 21  SPHRRQPHHSRSSSNNI--SSSLHSRLRRRRRSRSQRKQLQWQ 61


>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
 Frame = +3

Query: 255 PHTLPARWSHPHTLPARWSHPAAPAXXXXXXXXXXXXXXLPKATTTCTR-PRTRFSLKKP 431
           P T+P R   P T P R   P   A               P+     T  PRT   + +P
Sbjct: 561 PRTIPPRTEAPRTEPPRTEPPKTEAPRTVRPKTEAPMTVPPRTEPPMTEAPRTEVPMTEP 620

Query: 432 ARS---RTLAPKTK 464
            ++   RT  P+T+
Sbjct: 621 PKTEPPRTAPPRTE 634


>Z48783-2|CAC42295.1|  805|Caenorhabditis elegans Hypothetical
           protein F33H1.1b protein.
          Length = 805

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 314 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 409
           P+G   ++ Y  I Y N V P G + LY  ++
Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209


>Z48783-1|CAA88701.1|  780|Caenorhabditis elegans Hypothetical
           protein F33H1.1a protein.
          Length = 780

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 314 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 409
           P+G   ++ Y  I Y N V P G + LY  ++
Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184


>AF233652-1|AAF63475.1|  780|Caenorhabditis elegans RFX-type
           transcription factor DAF-19 short variant protein.
          Length = 780

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 314 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 409
           P+G   ++ Y  I Y N V P G + LY  ++
Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184


>AF226156-1|AAF61564.1|  805|Caenorhabditis elegans RFX-like
           transcription factor DAF-19 protein.
          Length = 805

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 314 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 409
           P+G   ++ Y  I Y N V P G + LY  ++
Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209


>AF026212-4|AAF99973.2|  386|Caenorhabditis elegans Hypothetical
           protein F52G3.5 protein.
          Length = 386

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 384 TTTCTRPRTRFSL-KKPARSRTLAPKTKA*RSRDSTNTLAPT 506
           TTT   P T     KK  ++R+  PKT    +  +T T APT
Sbjct: 195 TTTTEEPSTTSEYRKKSKKNRSKRPKTTKTTTTSTTTTEAPT 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,075,680
Number of Sequences: 27780
Number of extensions: 165026
Number of successful extensions: 555
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)