Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31309
         (509 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73990.1 68414.m08569 peptidase U7 family protein similar to ...    27   7.3  
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s...    27   9.7  

>At1g73990.1 68414.m08569 peptidase U7 family protein similar to
           protease IV GB:AAA57008 from [Escherichia coli];
           contains Pfam profile PF01343: Peptidase family U7
          Length = 677

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +2

Query: 347 IIRYDNDVAPEGYHYLYETENKILAEEAGKVENVGTENEGMKVKGFYEYVG 499
           +I   +DVA  G +Y+    N I+AE      ++G       +   YE +G
Sbjct: 450 VIASMSDVAASGGYYMAMAANAIVAENLTLTGSIGVVTARFTLAKLYEKIG 500


>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
           similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
           [Drosophila melanogaster]
          Length = 926

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 235 HSRASHTHIRCQQGGHTHIRCQQGGPTQR 321
           ++R S+  I CQQ GH    C    P  R
Sbjct: 760 NTRQSNVCIHCQQRGHASTNCPSRVPASR 788


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,709,834
Number of Sequences: 28952
Number of extensions: 156960
Number of successful extensions: 478
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)