Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31306
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.04 |pam17||presequence translocase-associated motor subu...    27   2.0  
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    27   2.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.5  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   6.0  
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch...    26   6.0  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    25   7.9  

>SPAC167.04 |pam17||presequence translocase-associated motor subunit
           Pam17 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +1

Query: 358 RYIKRSRNT--MESIS*QFIMYNLHKI-SLFDFVFWLRDEKCY 477
           R++ ++R T  MES S     Y   KI SL D+  WLRD+K Y
Sbjct: 144 RHLVKNRVTPQMESYSNPIPDYYGEKIYSLSDYRRWLRDQKAY 186


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 154 CDADSPAWQHSSSRHTSPLYVLATDW 77
           CD  S ++ HS S HT    VLA DW
Sbjct: 174 CDMQSGSYTHSLSGHTG--NVLAVDW 197


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 150 TRTVPPGSTARPGTRVRCTSS 88
           T TVPP S++ P T   CT+S
Sbjct: 410 TPTVPPTSSSTPLTTTNCTTS 430


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 115  RHTSPLYVLATDWLW 71
            +H  P+Y L  DWLW
Sbjct: 1361 QHLIPIYSLPQDWLW 1375


>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
           Spo14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 9   IRRVYKYPITLNDETASLRSDHSQSVARTYNGLVCLDELCCQAGLSASQLDD 164
           + +VYK+ + + D    L  D    V+ + +GL+CL  +     LSA +L+D
Sbjct: 291 LSQVYKHSLPVTD--MQLSPDSEALVSVSADGLLCLQFVGKFKNLSAVKLED 340


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +3

Query: 3   GLIRRVYKYPITLNDETASLRSDHSQSVARTYNGLVCLDELCCQAGLSASQLDDQLERDT 182
           GLI RV+KYP        +  ++  + +    +G    DELC     S   +++ +    
Sbjct: 343 GLIYRVHKYPYLERRTMRNNLTEEEKKLLGLLDGKHHFDELCVTLKKSPKVVNEMIAGLG 402

Query: 183 NVAFI 197
           +  FI
Sbjct: 403 DACFI 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,968
Number of Sequences: 5004
Number of extensions: 49244
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)