Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31306
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0626 - 5445676-5446687,5447099-5447430                           28   6.2  
03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598     28   6.2  
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65...    28   8.2  

>08_01_0626 - 5445676-5446687,5447099-5447430
          Length = 447

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 371 VPVIQWKVSPDNLLCTIYIKLVSLTLSFGLGM 466
           +PV  W   P + L TI++KL S+ +  G G+
Sbjct: 11  LPVRDWSDLPTDALSTIFMKLGSIEVLMGAGL 42


>03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598
          Length = 537

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 159 RAATRTVPPGSTARPGTRVRCTSS 88
           RA   T PP S+  PG+R+RCT+S
Sbjct: 493 RAMALTAPPTSSP-PGSRLRCTAS 515


>08_01_0090 -
           649631-651162,653189-655019,655313-655365,655731-655735,
           656209-656411,656837-657292,657718-657805,657917-658017,
           658404-658631,659128-659445,659528-659812,660148-660711
          Length = 1887

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +2

Query: 29  SNNFERRDGVASKRPQPVGSEDVQRTRVPGRAVLPGGTVRVAARRPTGAGHERRLHRQVR 208
           S++  + DG A+K P  V      R    G  + PG  +    R      HER++ + VR
Sbjct: 664 SSSHRKDDGAANKEPTVVNGAKKSRIHYSGPLMPPGVNMEEILRE-----HERQIQQAVR 718

Query: 209 VVR 217
             R
Sbjct: 719 RAR 721


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,177,445
Number of Sequences: 37544
Number of extensions: 303850
Number of successful extensions: 861
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)